DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Genomes

By default, the genomes are sorted by descending number of PFAM predicted transcription factors.
The genome size is in number of protein sequences.
Clicking on one of the column arrows re-sorts on that column.

Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus and Saccharomyces cerevisiae.

An error occured in context "Browse" cell "1.14"
in the section containing the code:
001 
002 
003 import dbd, sys
004 
005 url = globals.HomeURLBase
006 
007 cellhead()
008 
009 print "Genomes"
010 
011 cellbody()
012 
013 print """
014 <blockquote>
015 <p>
016 By default, the genomes are sorted by descending number of PFAM predicted transcription factors.
017 <br>
018 The genome size is in number of protein sequences.
019 <br>
020 Clicking on one of the column arrows re-sorts on that column.
021 <br>
022 <br>
023 Common gene names are provided for the model organisms: <i>Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus</i> and <i>Saccharomyces cerevisiae.</i>
024 </p>
025 """
026 
027 params = {}
028 for i in sys.argv[2:]:
029 	[key, val] = i.split(":", 1)
030 	params[key] = val
031 
032 cellbody()
033 
034 dbd.print_genomes_table(url, params)
035 
036 cellend()
037 
Traceback (most recent call last):
  File "/net/isilonP/public/rw/research/teichmann/apache/test/DBD/web.py", line 148, in gen_cell
    exec _code in _globals_d, _locals_d
  File "<string>", line 34, in <module>
  File "/net/isilonP/public/rw/research/teichmann/apache/test/DBD/dbd.py", line 1266, in print_genomes_table
    for row in get_genome_table_data(orderby=params["orderby"]):
  File "/net/isilonP/public/rw/research/teichmann/apache/test/DBD/dbd.py", line 443, in get_genome_table_data
    c = get_db_cursor()
  File "/net/isilonP/public/rw/research/teichmann/apache/test/DBD/dbd.py", line 68, in get_db_cursor
    db = MySQLdb.connect(host="mysql-teichmann-web.ebi.ac.uk", port=4412, user="admin", passwd="z2Kd6OvN", db="DBD2")
  File "/usr/lib64/python2.6/site-packages/MySQLdb/__init__.py", line 81, in Connect
    return Connection(*args, **kwargs)
  File "/usr/lib64/python2.6/site-packages/MySQLdb/connections.py", line 187, in __init__
    super(Connection, self).__init__(*args, **kwargs2)
OperationalError: (2003, "Can't connect to MySQL server on 'mysql-teichmann-web.ebi.ac.uk' (111)")