DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Families

The Hidden Markov Models (HMMs) are sorted alphabetically by family name.
Please note that for the SUPERFAMILY database there can be several HMMs for the same superfamily.
The transcription factor (TF) predictions View links to all the matches of the HMM across all the genomes in the DBD database.
The taxonomic distribution links to external data on the distribution of DBD families across the tree of life.

An error occured in context "Domain" cell "1.00"
in the section containing the code:
001 
002 
003 import dbd, sys
004 
005 cellhead()
006 
007 params = dbd.parse_params()
008 
009 if session.get("domain"):
010 	domain = session["domain"]
011 elif params.has_key("domain"):
012 	domain = params["domain"]
013 else:
014 	print "Error"
015 	cellbody()
016 	dbd.print_error_cell("Please specify a domain family")
017 	sys.exit()
018 
019 if domain == "all":
020 	print "Families"
021 	cellbody()
022         print """ <blockquote>"""
023 	print """<p> The Hidden Markov Models (HMMs) are sorted alphabetically by family name. <br> """
024         print """ Please note that for the SUPERFAMILY database there can be several HMMs for the same superfamily. <br>"""
025         print """ The transcription factor (TF) predictions View links to all the matches of the HMM across all the genomes in the DBD database. <br>"""
026 	print """ The taxonomic distribution links to external data on the distribution of DBD families across the tree of life.</p>"""
027 	dbd.print_domain_table(globals.HomeURLBase, dbd.IMAGE_GEN_DIR, dbd.get_model_table_data, "DBD", domain)
028 else:
029 	print "Domain family search: %s" %(domain)
030 	cellbody()
031 	dbd.print_domain_table(globals.HomeURLBase, dbd.IMAGE_GEN_DIR, dbd.model_by_search_domain, "DBD", domain)
032 
033 cellend()
034 
035 
Traceback (most recent call last):
  File "/net/isilonP/public/rw/research/teichmann/apache/live/DBD/web.py", line 148, in gen_cell
    exec _code in _globals_d, _locals_d
  File "<string>", line 27, in <module>
  File "/net/isilonP/public/rw/research/teichmann/apache/live/DBD/dbd.py", line 592, in print_domain_table
    for row in sql_function(search_cat, search_term):
  File "/net/isilonP/public/rw/research/teichmann/apache/live/DBD/dbd.py", line 415, in get_model_table_data
    c = get_db_cursor()
  File "/net/isilonP/public/rw/research/teichmann/apache/live/DBD/dbd.py", line 68, in get_db_cursor
    db = MySQLdb.connect(host="mysql-teichmann-web.ebi.ac.uk", port=4412, user="admin", passwd="z2Kd6OvN", db="DBD2")
  File "/usr/lib64/python2.6/site-packages/MySQLdb/__init__.py", line 81, in Connect
    return Connection(*args, **kwargs)
  File "/usr/lib64/python2.6/site-packages/MySQLdb/connections.py", line 187, in __init__
    super(Connection, self).__init__(*args, **kwargs2)
OperationalError: (2003, "Can't connect to MySQL server on 'mysql-teichmann-web.ebi.ac.uk' (111)")