DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Hand curated DNA binding domain HMM list
README
SUPERFAMILY 1.69
PFAM 18

Genome-wide transcription factor predictions
An error occured in context "Download" cell "1.1"
in the section containing the code:
001 
002 
003 import dbd
004 cellhead()
005 
006 print "Genome-wide transcription factor predictions"
007 
008 cellbody()
009 
010 print '''
011 <a href=http://supfam.org/SUPERFAMILY/cgi-bin/genome_names.cgi>List</a> of 2 character genome codes and the organisms they correspond to.
012 <table>
013 <tr><td>
014 	<table>
015 	<tr><td class="titletext" colspan=2> File format (Tab delimitted):</td></tr>
016 	<tr><td>Column 1: </td><td>Hidden Markov Model identifier</td></tr>
017 	<tr><td>Column 2: </td><td>Sequence identifier</td></tr>
018 	<tr><td>Column 3: </td><td>Match region</td></tr>
019 	<tr><td>Column 4: </td><td>Family name</td></tr>
020 	</table>
021 </td></tr>
022 <tr><td>
023 	%s
024 </td></tr>
025 </table>
026 
027 '''% (dbd.get_genomes_download_table({}))
028 
029 
030 cellend()
031 
Traceback (most recent call last):
  File "/net/isilonP/public/rw/research/teichmann/apache/test/DBD/web.py", line 148, in gen_cell
    exec _code in _globals_d, _locals_d
  File "<string>", line 27, in <module>
  File "/net/isilonP/public/rw/research/teichmann/apache/test/DBD/dbd.py", line 1128, in get_genomes_download_table
    for row in get_genome_table_data(orderby=params["orderby"]):
  File "/net/isilonP/public/rw/research/teichmann/apache/test/DBD/dbd.py", line 443, in get_genome_table_data
    c = get_db_cursor()
  File "/net/isilonP/public/rw/research/teichmann/apache/test/DBD/dbd.py", line 68, in get_db_cursor
    db = MySQLdb.connect(host="mysql-teichmann-web.ebi.ac.uk", port=4412, user="admin", passwd="z2Kd6OvN", db="DBD2")
  File "/usr/lib64/python2.6/site-packages/MySQLdb/__init__.py", line 81, in Connect
    return Connection(*args, **kwargs)
  File "/usr/lib64/python2.6/site-packages/MySQLdb/connections.py", line 187, in __init__
    super(Connection, self).__init__(*args, **kwargs2)
OperationalError: (2003, "Can't connect to MySQL server on 'mysql-teichmann-web.ebi.ac.uk' (111)")

Error: file "1.69" can't be owned by anyone else or have any non-owner permission set.

File mode 16384 is not a regular file.

File permissions should be 0600, not 0711.