DBD: Transcription factor prediction database
Release 2.0
www.transcriptionfactor.org
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Hand curated DNA binding domain HMM list
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SUPERFAMILY 1.69
PFAM 18

Genome-wide transcription factor predictions
List of 2 character genome codes and the organisms they correspond to.
File format (Tab delimitted):
Column 1: Hidden Markov Model identifier
Column 2: Sequence identifier
Column 3: Match region
Column 4: Family name
Genome Domain assignments
Monodelphis domestica 49_5d (all transcripts) Transcription factors All genes
Takifugu rubripes 49_4i (all transcripts) Transcription factors All genes
Homo sapiens 49_36k (all transcripts) Transcription factors All genes
Xenopus laevis  Transcription factors All genes
Branchiostoma floridae 1.0 Transcription factors All genes
Mus musculus 49_37b (all transcripts) Transcription factors All genes
Macaca mulatta 49_10h (all transcripts) Transcription factors All genes
Glycine max Early assembly  Transcription factors All genes
Zea mays subsp. mays Early assembly  Transcription factors All genes
Pan troglodytes 49_21h (all transcripts) Transcription factors All genes
Danio rerio 49_7c (all transcripts) Transcription factors All genes
Oryza sativa ssp. japonica 5.0 Transcription factors All genes
Populus trichocarpa 1.1 Transcription factors All genes
Rattus norvegicus 49_34s (all transcripts) Transcription factors All genes
Xenopus tropicalis 49_41i (all transcripts) Transcription factors All genes
Arabidopsis thaliana 8 (all transcripts) Transcription factors All genes
Homo sapiens 49_36k (longest transcript per gene) Transcription factors All genes
Pongo pygmaeus 49_1 (all transcripts) Transcription factors All genes
Bos taurus 49_3f (all transcripts) Transcription factors All genes
Gasterosteus aculeatus 49_1f (all transcripts) Transcription factors All genes
Mus musculus 49_37b (longest transcript per gene) Transcription factors All genes
Monodelphis domestica 49_5d (longest transcript per gene) Transcription factors All genes
Macaca mulatta 49_10h (longest transcript per gene) Transcription factors All genes
Pan troglodytes 49_21h (longest transcript per gene) Transcription factors All genes
Equus caballus 49_2 (all transcripts) Transcription factors All genes
Oryzias latipes 49_1e (all transcripts) Transcription factors All genes
Tetraodon nigroviridis 49_1k (all transcripts) Transcription factors All genes
Tetraodon nigroviridis 49_1k (longest transcript per gene) Transcription factors All genes
Ricinus communis  Early Assembly Transcription factors All genes
Danio rerio 49_7c (longest transcript per gene) Transcription factors All genes
Sorghum bicolor  Transcription factors All genes
Pongo pygmaeus 49_1 (longest transcript per gene) Transcription factors All genes
Canis familiaris 49_2g (all transcripts) Transcription factors All genes
Equus caballus 49_2 (longest transcript per gene) Transcription factors All genes
Takifugu rubripes 49_4i (longest transcript per gene) Transcription factors All genes
Ornithorhynchus anatinus 49_1f (all transcripts) Transcription factors All genes
Rattus norvegicus 49_34s (longest transcript per gene) Transcription factors All genes
Arabidopsis thaliana 8 (longest transcript per gene) Transcription factors All genes
Gasterosteus aculeatus 49_1f (longest transcript per gene) Transcription factors All genes
Bos taurus 49_3f (longest transcript per gene) Transcription factors All genes
Trichomonas vaginalis  Transcription factors All genes
Oryzias latipes 49_1e (longest transcript per gene) Transcription factors All genes
Gallus gallus 49_2g (all transcripts) Transcription factors All genes
Apis mellifera 37.2d (all transcripts) Transcription factors All genes
Drosophila melanogaster FlyBase 5.7 (all transcripts) Transcription factors All genes
Xenopus tropicalis 49_41i (longest transcript per gene) Transcription factors All genes
Drosophila melanogaster Ensembl 49_54 (all transcripts) Transcription factors All genes
Canis familiaris 49_2g (longest transcript per gene) Transcription factors All genes
Aedes aegypti 49_1b (all transcripts) Transcription factors All genes
Caenorhabditis elegans Ensembl 49_180a (all transcripts) Transcription factors All genes
Microcebus murinus 49_1 (all transcripts) Transcription factors All genes
Microcebus murinus 49_1 (longest transcript per gene) Transcription factors All genes
Acyrthosiphon pisum  Transcription factors All genes
Carica papaya  Transcription factors All genes
Echinops telfairi 49_1e (all transcripts) Transcription factors All genes
Echinops telfairi 49_1e (longest transcript per gene) Transcription factors All genes
Loxodonta africana 49_1d (all transcripts) Transcription factors All genes
Loxodonta africana 49_1d (longest transcript per gene) Transcription factors All genes
Myotis lucifugus 49_1e (all transcripts) Transcription factors All genes
Myotis lucifugus 49_1e (longest transcript per gene) Transcription factors All genes
Aedes aegypti 49_1b (longest transcript per gene) Transcription factors All genes
Dasypus novemcinctus 49_1f (all transcripts) Transcription factors All genes
Dasypus novemcinctus 49_1f (longest transcript per gene) Transcription factors All genes
Vitis vinifera  Transcription factors All genes
Capitella sp. I  Transcription factors All genes
Helobdella robusta  Transcription factors All genes
Ochotona princeps 49_1 (all transcripts) Transcription factors All genes
Ochotona princeps 49_1 (longest transcript per gene) Transcription factors All genes
Otolemur garnettii 49_1c (all transcripts) Transcription factors All genes
Otolemur garnettii 49_1c (longest transcript per gene) Transcription factors All genes
Anolis carolinensis  Early Assembly Transcription factors All genes
Caenorhabditis elegans WormBase WS147 (all transcripts) Transcription factors All genes
Strongylocentrotus purpuratus  Transcription factors All genes
Felis catus 49_1c (all transcripts) Transcription factors All genes
Felis catus 49_1c (longest transcript per gene) Transcription factors All genes
Culex pipiens quinquefasciatus  Transcription factors All genes
Oryctolagus cuniculus 49_1f (all transcripts) Transcription factors All genes
Oryctolagus cuniculus 49_1f (longest transcript per gene) Transcription factors All genes
Lottia gigantea  Transcription factors All genes
Spermophilus tridecemlineatus 49_1e (all transcripts) Transcription factors All genes
Spermophilus tridecemlineatus 49_1e (longest transcript per gene) Transcription factors All genes
Tupaia belangeri 49_1d (all transcripts) Transcription factors All genes
Tupaia belangeri 49_1d (longest transcript per gene) Transcription factors All genes
Gallus gallus 49_2g (longest transcript per gene) Transcription factors All genes
Ornithorhynchus anatinus 49_1f (longest transcript per gene) Transcription factors All genes
Physcomitrella patens subsp. patens  Transcription factors All genes
Cavia porcellus 49_1c (all transcripts) Transcription factors All genes
Cavia porcellus 49_1c (longest transcript per gene) Transcription factors All genes
Erinaceus europaeus 49_1c (all transcripts) Transcription factors All genes
Erinaceus europaeus 49_1c (longest transcript per gene) Transcription factors All genes
Burkholderia sp. 383 Transcription factors All genes
Caenorhabditis briggsae 2 Transcription factors All genes
Nematostella vectensis 1.0 Transcription factors All genes
Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene) Transcription factors All genes
Caenorhabditis elegans WormBase WS147 (longest transcript per gene) Transcription factors All genes
Drosophila grimshawi 1.2 Transcription factors All genes
Drosophila virilis 1.1 Transcription factors All genes
Drosophila sechellia 1.2 Transcription factors All genes
Drosophila yakuba 1.2 Transcription factors All genes
Drosophila pseudoobscura 2.2 Transcription factors All genes
Bombyx mori  Transcription factors All genes
Burkholderia cenocepacia MC0-3 Transcription factors All genes
Drosophila willistoni 1.2 Transcription factors All genes
Drosophila erecta 1.2 Transcription factors All genes
Drosophila mojavensis 1.2 Transcription factors All genes
Tribolium castaneum 3.0 Transcription factors All genes
Anopheles gambiae 49_3j (all transcripts) Transcription factors All genes
Ciona savignyi 49_2f (all transcripts) Transcription factors All genes
Drosophila persimilis 1.2 Transcription factors All genes
Drosophila ananassae 1.2 Transcription factors All genes
Drosophila melanogaster Ensembl 49_54 (longest transcript per gene) Transcription factors All genes
Sorex araneus 49_1c (all transcripts) Transcription factors All genes
Sorex araneus 49_1c (longest transcript per gene) Transcription factors All genes
Drosophila melanogaster FlyBase 4.2 (longest transcript per gene) Transcription factors All genes
Burkholderia cenocepacia HI2424 Transcription factors All genes
Burkholderia xenovorans LB400 Transcription factors All genes
Anopheles gambiae 49_3j (longest transcript per gene) Transcription factors All genes
Drosophila simulans 1.2 Transcription factors All genes
Burkholderia cenocepacia AU 1054 Transcription factors All genes
Daphnia pulex  Transcription factors All genes
Ciona intestinalis 49_2i (all transcripts) Transcription factors All genes
Medicago truncatula  Transcription factors All genes
Burkholderia cepacia AMMD Transcription factors All genes
Pediculus humanus corporis  Early Assembly Transcription factors All genes
Streptomyces coelicolor A3(2) Transcription factors All genes
Burkholderia ambifaria MC40-6 Transcription factors All genes
Ralstonia eutropha H16 Transcription factors All genes
Burkholderia multivorans ATCC 17616 Transcription factors All genes
Streptomyces avermitilis MA-4680 Transcription factors All genes
Delftia acidovorans SPH-1 Transcription factors All genes
Burkholderia vietnamiensis G4 Transcription factors All genes
Saccharopolyspora erythraea NRRL 2338 Transcription factors All genes
Bordetella pertussis Tohama I Transcription factors All genes
Streptomyces griseus ssp. griseus NBRC 13350 Transcription factors All genes
Pseudomonas fluorescens Pf-5 Transcription factors All genes
Ralstonia eutropha JMP134 Transcription factors All genes
Mesorhizobium loti MAFF303099 Transcription factors All genes
Phycomyces blakesleeanus  Transcription factors All genes
Apis mellifera 37.2d (longest transcript per gene) Transcription factors All genes
Schistosoma mansoni  Early Assembly Transcription factors All genes
Bradyrhizobium japonicum USDA 110 Transcription factors All genes
Brugia malayi  Transcription factors All genes
Rhizopus oryzae RA 99-880  Transcription factors All genes
Ralstonia metallidurans CH34 Transcription factors All genes
Selaginella moellendorffii  Transcription factors All genes
Rhodococcus sp. RHA1 Transcription factors All genes
Pseudomonas aeruginosa UCBPP-PA14 Transcription factors All genes
Pseudomonas aeruginosa PAO1 Transcription factors All genes
Ciona intestinalis 49_2i (longest transcript per gene) Transcription factors All genes
Pseudomonas aeruginosa PA7 Transcription factors All genes
Pseudomonas fluorescens PfO-1 Transcription factors All genes
Ciona savignyi 49_2f (longest transcript per gene) Transcription factors All genes
Pseudomonas putida GB-1 Transcription factors All genes
Clostridium beijerinckii NCIMB 8052 Transcription factors All genes
Serratia proteamaculans 568 Transcription factors All genes
Nasonia vitripennis  Transcription factors All genes
Pseudomonas putida F1 Transcription factors All genes
Hydra magnipapillata  Transcription factors All genes
Bordetella bronchiseptica RB50 Transcription factors All genes
Burkholderia phymatum STM815 Transcription factors All genes
Klebsiella pneumoniae ssp. pneumoniae MGH 78578 Transcription factors All genes
Burkholderia pseudomallei K96243 Transcription factors All genes
Pseudomonas putida KT2440 Transcription factors All genes
Pseudomonas putida W619 Transcription factors All genes
Frankia sp. EAN1pec Transcription factors All genes
Burkholderia thailandensis E264 Transcription factors All genes
Burkholderia pseudomallei 1710b Transcription factors All genes
Burkholderia pseudomallei 668 Transcription factors All genes
Desulfitobacterium hafniense Y51 Transcription factors All genes
Bordetella petrii DSM 12804 Transcription factors All genes
Burkholderia pseudomallei 1106a Transcription factors All genes
Mycobacterium smegmatis MC2 155 Transcription factors All genes
Bradyrhizobium sp. BTAi1 Transcription factors All genes
Marinomonas sp. MWYL1 Transcription factors All genes
Pseudomonas entomophila L48 Transcription factors All genes
Rhizobium leguminosarum bv. viciae 3841 Transcription factors All genes
Nocardia farcinica IFM 10152 Transcription factors All genes
Polaromonas sp. JS666 Transcription factors All genes
Clostridium difficile 630 Transcription factors All genes
Paramecium tetraurelia  Transcription factors All genes
Bordetella parapertussis 12822 Transcription factors All genes
Hahella chejuensis KCTC 2396 Transcription factors All genes
Methylobacterium sp. 4-46 Transcription factors All genes
Bacillus cereus E33L Transcription factors All genes
Agrobacterium tumefaciens C58 Transcription factors All genes
Burkholderia mallei NCTC 10247 Transcription factors All genes
Burkholderia mallei ATCC 23344 Transcription factors All genes
Photobacterium profundum SS9 Transcription factors All genes
Sorangium cellulosum So ce 56 Transcription factors All genes
Bradyrhizobium sp. ORS278 Transcription factors All genes
Burkholderia mallei NCTC 10229 Transcription factors All genes
Frankia alni ACN14a Transcription factors All genes
Pseudomonas syringae pv. tomato DC3000 Transcription factors All genes
Bacillus anthracis Sterne Transcription factors All genes
Bacillus weihenstephanensis KBAB4 Transcription factors All genes
Pseudomonas syringae pv. syringae B728a Transcription factors All genes
Bacillus cereus ATCC 10987 Transcription factors All genes
Vibrio parahaemolyticus RIMD 2210633 Transcription factors All genes
Azorhizobium caulinodans ORS 571 Transcription factors All genes
Bacillus clausii KSM-K16 Transcription factors All genes
Bacillus anthracis Ames Transcription factors All genes
Bacillus anthracis Ames Ancestor Transcription factors All genes
Pseudomonas mendocina ymp Transcription factors All genes
Bacillus cereus ATCC 14579 Transcription factors All genes
Salmonella typhimurium LT2 Transcription factors All genes
Bacillus thuringiensis ser. konkukian 97-27 Transcription factors All genes
Salmonella enterica ssp. enterica ser. Paratyphi B SPB7 Transcription factors All genes
Sphingomonas wittichii RW1 Transcription factors All genes
Emiliania huxleyi CCMP1516  Transcription factors All genes
Clostridium phytofermentans ISDg Transcription factors All genes
Erwinia carotovora ssp. atroseptica SCRI1043 Transcription factors All genes
Escherichia coli SECEC SMS-3-5 Transcription factors All genes
Enterobacter sp. 638 Transcription factors All genes
Escherichia coli CFT073 Transcription factors All genes
Escherichia coli O157:H7 Sakai Transcription factors All genes
Escherichia coli SMS-3-5 Transcription factors All genes
Ochrobactrum anthropi ATCC 49188 Transcription factors All genes
Bacillus thuringiensis Al Hakam Transcription factors All genes
Kineococcus radiotolerans SRS30216 Transcription factors All genes
Caulobacter sp. K31 Transcription factors All genes
Pseudomonas syringae pv. phaseolicola 1448A Transcription factors All genes
Citrobacter koseri ATCC BAA-895 Transcription factors All genes
Escherichia coli O157:H7 EDL933 Transcription factors All genes
Escherichia coli UTI89 Transcription factors All genes
Solibacter usitatus Ellin6076 Transcription factors All genes
Vibrio vulnificus YJ016 Transcription factors All genes
Escherichia coli 536 Transcription factors All genes
Shewanella woodyi ATCC 51908 Transcription factors All genes
Salmonella enterica ssp. enterica ser. Heidelberg SL476 Transcription factors All genes
Salmonella enterica ssp. enterica ser. Newport SL254 Transcription factors All genes
Salmonella enterica ssp. enterica ser. Schwarzengrund str. Transcription factors All genes
Escherichia coli ATCC 8739 Transcription factors All genes
Methylobacterium radiotolerans JCM 2831 Transcription factors All genes
Salinispora arenicola CNS-205 Transcription factors All genes
Salmonella enterica ssp. enterica ser. Choleraesuisstr. SC-B67 Transcription factors All genes
Escherichia coli W3110 Transcription factors All genes
Salmonella enterica ssp. enterica ser. Typhi CT18 Transcription factors All genes
Salmonella enterica ssp. enterica ser. Typhi Ty2 Transcription factors All genes
Salmonella typhi Transcription factors All genes
Escherichia coli E24377A Transcription factors All genes
Salmonella enterica ssp. enterica ser. Paratyphi A ATCC 9150 Transcription factors All genes
Escherichia coli APEC O1 Transcription factors All genes
Mycobacterium vanbaalenii PYR-1 Transcription factors All genes
Yersinia enterocolitica ssp. enterocolitica 8081 Transcription factors All genes
Fusarium oxysporum f. sp. lycopersici 4286  Transcription factors All genes
Escherichia coli K12 Transcription factors All genes
Vibrio vulnificus CMCP6 Transcription factors All genes
Paracoccus denitrificans PD1222 Transcription factors All genes
Escherichia coli HS Transcription factors All genes
Photorhabdus luminescens ssp. laumondii TTO1 Transcription factors All genes
Arthrobacter aurescens TC1 Transcription factors All genes
Escherichia coli K12 subDH10B Transcription factors All genes
Shewanella sediminis HAW-EB3 Transcription factors All genes
Burkholderia mallei SAVP1 Transcription factors All genes
Aeromonas hydrophila ssp. hydrophila ATCC 7966 Transcription factors All genes
Flavobacterium johnsoniae UW101 Transcription factors All genes
Vibrio harveyi ATCC BAA-1116 Transcription factors All genes
Bacillus licheniformis ATCC 14580 Transcription factors All genes
Colwellia psychrerythraea 34H Transcription factors All genes
Sclerotinia sclerotiorum  Transcription factors All genes
Arthrobacter sp. FB24 Transcription factors All genes
Xanthobacter autotrophicus Py2 Transcription factors All genes
Bacillus licheniformis ATCC 14580 Transcription factors All genes
Clostridium botulinum A3 Loch Maree Transcription factors All genes
Rhizobium etli CIAT 652 Transcription factors All genes
Verminephrobacter eiseniae EF01-2 Transcription factors All genes
Enterobacter sakazakii ATCC BAA-894 Transcription factors All genes
Lysinibacillus sphaericus C3-41 Transcription factors All genes
Stenotrophomonas maltophilia R551-3 Transcription factors All genes
Clostridium kluyveri DSM 555 Transcription factors All genes
Rhizobium etli CFN 42 Transcription factors All genes
Salmonella enterica ssp. arizonae ser. 62:z4,z23:-- Transcription factors All genes
Trichoplax adhaerens  Transcription factors All genes
Clostridium botulinum F Langeland Transcription factors All genes
Silicibacter pomeroyi DSS-3 Transcription factors All genes
Stenotrophomonas maltophilia K279a Transcription factors All genes
Mycobacterium sp. JLS Transcription factors All genes
Clostridium botulinum B1 Okra Transcription factors All genes
Clostridium botulinum A ATCC 19397 Transcription factors All genes
Salinispora tropica CNB-440 Transcription factors All genes
Lactobacillus plantarum WCFS1 Transcription factors All genes
Shewanella baltica OS195 Transcription factors All genes
Bacillus halodurans C-125 Transcription factors All genes
Chromobacterium violaceum ATCC 12472 Transcription factors All genes
Postia placenta  Transcription factors All genes
Bacillus subtilis ssp. subtilis 168 Transcription factors All genes
Clostridium botulinum A ATCC 3502 Transcription factors All genes
Magnaporthe grisea 7 r2.3 Transcription factors All genes
Alkaliphilus metalliredigens QYMF Transcription factors All genes
Clostridium botulinum A Hall Transcription factors All genes
Shewanella baltica OS185 Transcription factors All genes
Acidovorax avenae ssp. citrulli AAC00-1 Transcription factors All genes
Janthinobacterium sp. Marseille Transcription factors All genes
Myxococcus xanthus DK 1622 Transcription factors All genes
Sinorhizobium medicae WSM419 Transcription factors All genes
Mycobacterium sp. KMS Transcription factors All genes
Leptothrix cholodnii SP-6 Transcription factors All genes
Lotus japonicus  Early Assembly Transcription factors All genes
Aeromonas salmonicida ssp. salmonicida A449 Transcription factors All genes
Jannaschia sp. CCS1 Transcription factors All genes
Mycobacterium sp. MCS Transcription factors All genes
Chromohalobacter salexigens DSM 3043 Transcription factors All genes
Mesorhizobium sp. BNC1 Transcription factors All genes
Rhodopseudomonas palustris TIE-1 Transcription factors All genes
Shewanella pealeana ATCC 700345 Transcription factors All genes
Shewanella sp. ANA-3 Transcription factors All genes
Yersinia pseudotuberculosis IP 32953 Transcription factors All genes
Yersinia pseudotuberculosis YPIII Transcription factors All genes
Methylobacterium extorquens PA1 Transcription factors All genes
Shewanella halifaxensis HAW-EB4 Transcription factors All genes
Yersinia pseudotuberculosis IP 31758 Transcription factors All genes
Acinetobacter baumannii AYE Transcription factors All genes
Pseudoalteromonas atlantica T6c Transcription factors All genes
Shigella flexneri 5 8401 Transcription factors All genes
Vibrio fischeri ES114 Transcription factors All genes
Bacillus amyloliquefaciens FZB42 Transcription factors All genes
Bacillus pumilus SAFR-032 Transcription factors All genes
Yersinia pseudotuberculosis PB1/+ Transcription factors All genes
Mycobacterium abscessus Transcription factors All genes
Shigella sonnei Ss046 Transcription factors All genes
Sinorhizobium meliloti 1021 Transcription factors All genes
Yersinia pestis Antiqua Transcription factors All genes
Rhodopseudomonas palustris CGA009 Transcription factors All genes
Shewanella baltica OS155 Transcription factors All genes
Shigella flexneri 2a 2457T Transcription factors All genes
Bordetella avium 197N Transcription factors All genes
Rhodoferax ferrireducens T118 Transcription factors All genes
Acinetobacter baumannii ACICU Transcription factors All genes
Polaromonas naphthalenivorans CJ2 Transcription factors All genes
Shewanella loihica PV-4 Transcription factors All genes
Shigella flexneri 2a 301 Transcription factors All genes
Vibrio cholerae O395 Transcription factors All genes
Yersinia pestis Pestoides F Transcription factors All genes
Enterococcus faecalis V583 Transcription factors All genes
Erwinia tasmaniensis Transcription factors All genes
Frankia sp. CcI3 Transcription factors All genes
Listeria monocytogenes EGD-e Transcription factors All genes
Xanthomonas campestris pv. vesicatoria 85-10 Transcription factors All genes
Yersinia pestis CO92 Transcription factors All genes
Nocardioides sp. JS614 Transcription factors All genes
Yersinia pestis Nepal516 Transcription factors All genes
Herpetosiphon aurantiacus ATCC 23779 Transcription factors All genes
Pedobacter heparinus Transcription factors All genes
Shewanella frigidimarina NCIMB 400 Transcription factors All genes
Yersinia pestis biov. Medievalis 91001 Transcription factors All genes
Yersinia pestis KIM Transcription factors All genes
Mycobacterium gilvum PYR-GCK Transcription factors All genes
Rhodopseudomonas palustris BisB18 Transcription factors All genes
Rhodospirillum rubrum ATCC 11170 Transcription factors All genes
Shewanella sp. MR-7 Transcription factors All genes
Shigella boydii Sb227 Transcription factors All genes
Listeria innocua Clip11262 Transcription factors All genes
Shewanella putrefaciens CN-32 Transcription factors All genes
Azoarcus sp. BH72 Transcription factors All genes
Clostridium acetobutylicum ATCC 824 Transcription factors All genes
Shigella dysenteriae Sd197 Transcription factors All genes
Listeria monocytogenes 4b F2365 Transcription factors All genes
Shigella boydii CDC 3083-94 Transcription factors All genes
Shewanella oneidensis MR-1 Transcription factors All genes
Shewanella sp. MR-4 Transcription factors All genes
Vibrio cholerae O1 biov. eltor N16961 Transcription factors All genes
Shewanella sp. W3-18-1 Transcription factors All genes
Acidobacteria bacterium Ellin345 Transcription factors All genes
Acidovorax sp. JS42 Transcription factors All genes
Beijerinckia indica ssp. indica ATCC 9039 Transcription factors All genes
Xanthomonas axonopodis pv. citri 306 Transcription factors All genes
Nectria haematococca mpVI  Transcription factors All genes
Methylibium petroleiphilum PM1 Transcription factors All genes
Ralstonia solanacearum GMI1000 Transcription factors All genes
Shewanella amazonensis SB2B Transcription factors All genes
Bacteroides thetaiotaomicron VPI-5482 Transcription factors All genes
Lactobacillus casei BL23 Transcription factors All genes
Rhodopseudomonas palustris HaA2 Transcription factors All genes
Xanthomonas campestris pv. campestris 8004 Transcription factors All genes
Xanthomonas campestris pv. campestris ATCC 33913 Transcription factors All genes
Yersinia pestis Angola Transcription factors All genes
Bacillus cereus ssp. cytotoxis NVH 391-98 Transcription factors All genes
Geobacter uraniumreducens Rf4 Transcription factors All genes
Opitutus terrae PB90-1 Transcription factors All genes
Clostridium botulinum B Eklund 17B Transcription factors All genes
Pseudomonas stutzeri A1501 Transcription factors All genes
Listeria welshimeri ser. 6b SLCC5334 Transcription factors All genes
Rhodobacter sphaeroides ATCC 17029 Transcription factors All genes
Caulobacter crescentus CB15 Transcription factors All genes
Aspergillus nidulans 1 r3.1 Transcription factors All genes
Saccharophagus degradans 2-40 Transcription factors All genes
Acinetobacter sp. ADP1 Transcription factors All genes
Cupriavidus taiwanensis Transcription factors All genes
Fusarium graminearum  Transcription factors All genes
Clavibacter michiganensis ssp. michiganensis NCPPB 382 Transcription factors All genes
Oceanobacillus iheyensis HTE831 Transcription factors All genes
Rhodopseudomonas palustris BisA53 Transcription factors All genes
Roseobacter denitrificans OCh 114 Transcription factors All genes
Anaeromyxobacter dehalogenans 2CP-C Transcription factors All genes
Rhodobacter sphaeroides 2.4.1 Transcription factors All genes
Chaetomium globosum CBS 148.51  Transcription factors All genes
Marinobacter aquaeolei VT8 Transcription factors All genes
Alkaliphilus oremlandii OhILAs Transcription factors All genes
Brucella abortus S19 Transcription factors All genes
Aspergillus fumigatus Af293 Transcription factors All genes
Parvibaculum lavamentivorans DS-1 Transcription factors All genes
Silicibacter sp. TM1040 Transcription factors All genes
Puccinia graminis f. sp. tritici CRL 75-36-700-3  Transcription factors All genes
Brucella abortus bv. 1 9-941 Transcription factors All genes
Brucella melitensis 16M Transcription factors All genes
Brucella melitensis biov. Abortus 2308 Transcription factors All genes
Gluconacetobacter diazotrophicus PAl 5 Transcription factors All genes
Renibacterium salmoninarum ATCC 33209 Transcription factors All genes
Shewanella denitrificans OS217 Transcription factors All genes
Thermobifida fusca YX Transcription factors All genes
Brucella canis ATCC 23365 Transcription factors All genes
Rhodopseudomonas palustris BisB5 Transcription factors All genes
Lactobacillus casei ATCC 334 Transcription factors All genes
Dechloromonas aromatica RCB Transcription factors All genes
Dinoroseobacter shibae DFL 12 Transcription factors All genes
Geobacillus thermodenitrificans NG80-2 Transcription factors All genes
Mycobacterium marinum M Transcription factors All genes
Neosartorya fischeri NRRL 181  Transcription factors All genes
Brucella suis 1330 Transcription factors All genes
Brucella suis ATCC 23445 Transcription factors All genes
Magnetospirillum magneticum AMB-1 Transcription factors All genes
Fusarium verticillioides 7600  Transcription factors All genes
Laccaria bicolor  Transcription factors All genes
Clavibacter michiganensis ssp. sepedonicus Transcription factors All genes
Maricaulis maris MCS10 Transcription factors All genes
Aspergillus terreus NIH2624  Transcription factors All genes
Monosiga brevicollis  Transcription factors All genes
Pseudoalteromonas haloplanktis TAC125 Transcription factors All genes
Exiguobacterium sibiricum 255-15 Transcription factors All genes
Anaeromyxobacter sp. Fw109-5 Transcription factors All genes
Trichoderma virens  Transcription factors All genes
Aspergillus clavatus NRRL 1  Transcription factors All genes
Podospora anserina  Transcription factors All genes
Stagonospora nodorum 1 Transcription factors All genes
Aspergillus flavus NRRL3357  Transcription factors All genes
Phytophthora sojae 1.0 Transcription factors All genes
Brucella ovis ATCC 25840 Transcription factors All genes
Lactobacillus brevis ATCC 367 Transcription factors All genes
Aspergillus fumigatus A1163  Transcription factors All genes
Phytophthora infestans T30-4  Transcription factors All genes
Acinetobacter baumannii ATCC 17978 Transcription factors All genes
Verticillium dahliae VdLs.17  Transcription factors All genes
Geobacillus kaustophilus HTA426 Transcription factors All genes
Hyphomonas neptunium ATCC 15444 Transcription factors All genes
Cellvibrio japonicus Ueda107 Transcription factors All genes
Novosphingobium aromaticivorans DSM 12444 Transcription factors All genes
Botrytis cinerea B05.10  Transcription factors All genes
Corynebacterium glutamicum R Transcription factors All genes
Sphingopyxis alaskensis RB2256 Transcription factors All genes
Trichoderma atroviride  Transcription factors All genes
Mycobacterium avium 104 Transcription factors All genes
Bacteroides vulgatus ATCC 8482 Transcription factors All genes
Lactococcus lactis ssp. cremoris MG1363 Transcription factors All genes
Histoplasma capsulatum class NAmI strain WU24  Transcription factors All genes
Acaryochloris marina MBIC11017 Transcription factors All genes
Bacteroides fragilis NCTC 9343 Transcription factors All genes
Bacteroides fragilis YCH46 Transcription factors All genes
Rubrobacter xylanophilus DSM 9941 Transcription factors All genes
Candida glabrata Transcription factors All genes
Aromatoleum aromaticum EbN1 Transcription factors All genes
Psychromonas ingrahamii 37 Transcription factors All genes
Neurospora crassa 7 Transcription factors All genes
Saccharomyces cerevisiae Ensembl 49_1h (all transcripts) Transcription factors All genes
Saccharomyces cerevisiae SGD Transcription factors All genes
Herminiimonas arsenicoxydans Transcription factors All genes
Sodalis glossinidius morsitans Transcription factors All genes
Cochliobolus heterostrophus  Transcription factors All genes
Pyrenophora tritici-repentis  Transcription factors All genes
Staphylococcus saprophyticus ssp. saprophyticus ATCC 15305 Transcription factors All genes
Saccharomyces mikatae MIT Transcription factors All genes
Saccharomyces paradoxus MIT Transcription factors All genes
Clostridium perfringens ATCC 13124 Transcription factors All genes
Corynebacterium glutamicum ATCC 13032 Bielefeld Transcription factors All genes
Coprinopsis cinerea okayama7 130  Transcription factors All genes
Nostoc punctiforme PCC 73102 Transcription factors All genes
Xanthomonas oryzae pv. oryzae MAFF 311018 Transcription factors All genes
Coccidioides immitis RS  Transcription factors All genes
Saccharomyces cerevisiae YJM789  Transcription factors All genes
Trichoderma reesei 1.2 Transcription factors All genes
Corynebacterium glutamicum ATCC 13032 Kitasato Transcription factors All genes
Gloeobacter violaceus PCC 7421 Transcription factors All genes
Mycobacterium avium ssp. paratuberculosis K-10 Transcription factors All genes
Nostoc sp. PCC 7120 Transcription factors All genes
Batrachochytrium dendrobatidis JAM81  Transcription factors All genes
Phytophthora ramorum 1.0 Transcription factors All genes
Saccharomyces bayanus MIT Transcription factors All genes
Streptococcus mutans UA159 Transcription factors All genes
Vanderwaltozyma polyspora  Transcription factors All genes
Geobacter lovleyi SZ Transcription factors All genes
Staphylococcus haemolyticus JCSC1435 Transcription factors All genes
Lactobacillus sakei ssp. sakei 23K Transcription factors All genes
Staphylococcus aureus ssp. aureus JH1 Transcription factors All genes
Coccidioides posadasii RMSCC 3488  Transcription factors All genes
Chloroflexus aurantiacus J-10-fl Transcription factors All genes
Lactococcus lactis ssp. cremoris SK11 Transcription factors All genes
Lactococcus lactis ssp. lactis Il1403 Transcription factors All genes
Roseiflexus castenholzii DSM 13941 Transcription factors All genes
Staphylococcus aureus ssp. aureus JH9 Transcription factors All genes
Saccharomyces cerevisiae RM11-1a  Transcription factors All genes
Clostridium thermocellum ATCC 27405 Transcription factors All genes
Desulfotomaculum reducens MI-1 Transcription factors All genes
Coccidioides immitis RMSCC 2394  Transcription factors All genes
Mycosphaerella graminicola  Transcription factors All genes
Mycobacterium tuberculosis H37Ra Transcription factors All genes
Staphylococcus aureus ssp. aureus USA300 Transcription factors All genes
Streptococcus gordonii Challis subCH1 Transcription factors All genes
Streptococcus sanguinis SK36 Transcription factors All genes
Xanthomonas oryzae pv. oryzae KACC10331 Transcription factors All genes
Mycosphaerella fijiensis  Transcription factors All genes
Thalassiosira pseudonana Transcription factors All genes
Corynebacterium efficiens YS-314 Transcription factors All genes
Mycobacterium bovis AF2122/97 Transcription factors All genes
Mycobacterium bovis BCG Pasteur 1173P2 Transcription factors All genes
Mycobacterium tuberculosis H37Rv Transcription factors All genes
Parabacteroides distasonis ATCC 8503 Transcription factors All genes
Staphylococcus aureus ssp. aureus Mu3 Transcription factors All genes
Staphylococcus aureus ssp. aureus Mu50 Transcription factors All genes
Staphylococcus aureus ssp. aureus NCTC 8325 Transcription factors All genes
Aspergillus oryzae RIB40  Transcription factors All genes
Mycobacterium tuberculosis F11 Transcription factors All genes
Haloarcula marismortui ATCC 43049 Transcription factors All genes
Clostridium perfringens SM101 Transcription factors All genes
Clostridium tetani E88 Transcription factors All genes
Staphylococcus aureus ssp. aureus COL Transcription factors All genes
Candida albicans SC5314 Transcription factors All genes
Debaromyces hansenii Transcription factors All genes
Clostridium perfringens 13 Transcription factors All genes
Pediococcus pentosaceus ATCC 25745 Transcription factors All genes
Staphylococcus aureus ssp. aureus MRSA252 Transcription factors All genes
Coccidioides posadasii str. Silveira  Transcription factors All genes
Volvox carteri f. nagariensis  Transcription factors All genes
Geobacter sulfurreducens PCA Transcription factors All genes
Mycobacterium tuberculosis CDC1551 Transcription factors All genes
Staphylococcus aureus ssp. aureus MW2 Transcription factors All genes
Staphylococcus aureus ssp. aureus Newman Transcription factors All genes
Streptococcus agalactiae 2603V/R Transcription factors All genes
Anabaena variabilis ATCC 29413 Transcription factors All genes
Caldicellulosiruptor saccharolyticus DSM 8903 Transcription factors All genes
Mycobacterium ulcerans Agy99 Transcription factors All genes
Staphylococcus aureus ssp. aureus N315 Transcription factors All genes
Uncinocarpus reesii 1704  Transcription factors All genes
Moorella thermoacetica ATCC 39073 Transcription factors All genes
Nitrobacter hamburgensis X14 Transcription factors All genes
Staphylococcus aureus ssp. aureus MSSA476 Transcription factors All genes
Symbiobacterium thermophilum IAM 14863 Transcription factors All genes
Cryptococcus neoformans var. grubii H99  Transcription factors All genes
Roseiflexus sp. RS-1 Transcription factors All genes
Streptococcus agalactiae NEM316 Transcription factors All genes
Chlamydomonas reinhardtii 3.0 Transcription factors All genes
Chlorella sp. NC64A  Transcription factors All genes
Yarrowia lipolytica Transcription factors All genes
Staphylococcus aureus RF122 Transcription factors All genes
Syntrophobacter fumaroxidans MPOB Transcription factors All genes
Phanerochaete chrysosporium 2.1 Transcription factors All genes
Alcanivorax borkumensis SK2 Transcription factors All genes
Leuconostoc mesenteroides ssp. mesenteroides ATCC 8293 Transcription factors All genes
Batrachochytrium dendrobatidis JEL423  Transcription factors All genes
Pichia stipitis CBS 6054  Transcription factors All genes
Verticillium albo-atrum VaMs.102  Transcription factors All genes
Idiomarina loihiensis L2TR Transcription factors All genes
Rhodobacter sphaeroides ATCC 17025 Transcription factors All genes
Staphylococcus aureus ssp. aureus USA300_TCH1516 Transcription factors All genes
Streptococcus pyogenes MGAS10270 Transcription factors All genes
Streptococcus pyogenes MGAS10750 Transcription factors All genes
Thermoanaerobacter tengcongensis MB4 Transcription factors All genes
Aspergillus niger ATCC 1015  Transcription factors All genes
Candida guilliermondii ATCC 6260  Transcription factors All genes
Candida parapsilosis  Transcription factors All genes
Streptococcus agalactiae A909 Transcription factors All genes
Streptococcus pyogenes MGAS6180 Transcription factors All genes
Candida albicans WO-1  Transcription factors All genes
Candida lusitaniae ATCC 42720  Transcription factors All genes
Cryptococcus neoformans B-3501A  Transcription factors All genes
Phaeodactylum tricornutum  Transcription factors All genes
Acinetobacter baumannii SDF Transcription factors All genes
Rhodopirellula baltica SH 1 Transcription factors All genes
Candida tropicalis MYA-3404  Transcription factors All genes
Lodderomyces elongisporus NRRL YB-4239  Transcription factors All genes
Streptococcus suis 98HAH33 Transcription factors All genes
Dictyostelium purpureum  Transcription factors All genes
Gramella forsetii KT0803 Transcription factors All genes
Pelobacter carbinolicus DSM 2380 Transcription factors All genes
Pelobacter propionicus DSM 2379 Transcription factors All genes
Streptococcus pyogenes MGAS315 Transcription factors All genes
Coccidioides immitis RMSCC 3703  Transcription factors All genes
Ustilago maydis 1 r2 Transcription factors All genes
Streptococcus pyogenes SSI-1 Transcription factors All genes
Geobacter metallireducens GS-15 Transcription factors All genes
Leifsonia xyli ssp. xyli CTCB07 Transcription factors All genes
Streptococcus pneumoniae CGSP14 Transcription factors All genes
Streptococcus pneumoniae TIGR4 Transcription factors All genes
Streptococcus pyogenes MGAS8232 Transcription factors All genes
Streptococcus suis 05ZYH33 Transcription factors All genes
Coccidioides immitis H538.4  Transcription factors All genes
Kluyveromyces lactis Transcription factors All genes
Desulfovibrio desulfuricans ssp. desulfuricans G20 Transcription factors All genes
Streptococcus pneumoniae Hungary19A-6 Transcription factors All genes
Streptococcus pyogenes MGAS5005 Transcription factors All genes
Sulfolobus solfataricus P2 Transcription factors All genes
Ashbya gossypii 1.0 Transcription factors All genes
Clostridium novyi NT Transcription factors All genes
Cytophaga hutchinsonii ATCC 33406 Transcription factors All genes
Lactobacillus johnsonii NCC 533 Transcription factors All genes
Streptococcus pneumoniae R6 Transcription factors All genes
Bifidobacterium longum Transcription factors All genes
Desulfovibrio vulgaris ssp. vulgaris DP4 Transcription factors All genes
Desulfovibrio vulgaris ssp. vulgaris Hildenborough Transcription factors All genes
Pelotomaculum thermopropionicum SI Transcription factors All genes
Streptococcus pneumoniae G54 Transcription factors All genes
Mannheimia succiniciproducens MBEL55E Transcription factors All genes
Streptococcus pneumoniae D39 Transcription factors All genes
Streptococcus pyogenes Manfredo Transcription factors All genes
Streptococcus pyogenes MGAS2096 Transcription factors All genes
Thermoanaerobacter sp. X514 Transcription factors All genes
Methanosarcina acetivorans C2A Transcription factors All genes
Kluyveromyces waltii Transcription factors All genes
Micromonas sp. RCC299  Transcription factors All genes
Actinobacillus succinogenes 130Z Transcription factors All genes
Streptococcus pyogenes MGAS9429 Transcription factors All genes
Sulfolobus tokodaii 7 Transcription factors All genes
Leptospira biflexa ser. Patoc Patoc 1 (Ames) Transcription factors All genes
Methylobacillus flagellatus KT Transcription factors All genes
Streptococcus pyogenes MGAS10394 Transcription factors All genes
Tetrahymena thermophila 1 Transcription factors All genes
Granulibacter bethesdensis CGDNIH1 Transcription factors All genes
Staphylococcus epidermidis RP62A Transcription factors All genes
Streptococcus pyogenes M1 GAS Transcription factors All genes
Bdellovibrio bacteriovorus HD100 Transcription factors All genes
Dictyostelium discoideum Transcription factors All genes
Carboxydothermus hydrogenoformans Z-2901 Transcription factors All genes
Lactobacillus acidophilus NCFM Transcription factors All genes
Thermoanaerobacter pseudethanolicus ATCC 33223 Transcription factors All genes
Micromonas sp. CCMP490  Transcription factors All genes
Lactobacillus gasseri ATCC 33323 Transcription factors All genes
Leptospira biflexa ser. Patoc Patoc 1 (Paris) Transcription factors All genes
Leuconostoc citreum KM20 Transcription factors All genes
Kocuria rhizophila DC2201 Transcription factors All genes
Lactobacillus reuteri F275 Transcription factors All genes
Cryptococcus neoformans JEC21  Transcription factors All genes
Alkalilimnicola ehrlichei MLHE-1 Transcription factors All genes
Erythrobacter litoralis HTCC2594 Transcription factors All genes
Staphylococcus epidermidis ATCC 12228 Transcription factors All genes
Arcobacter butzleri RM4018 Transcription factors All genes
Nitrobacter winogradskyi Nb-255 Transcription factors All genes
Bifidobacterium longum NCC2705 Transcription factors All genes
Lactobacillus salivarius ssp. salivarius UCC118 Transcription factors All genes
Propionibacterium acnes KPA171202 Transcription factors All genes
Gluconobacter oxydans 621H Transcription factors All genes
Oenococcus oeni PSU-1 Transcription factors All genes
Syntrophus aciditrophicus SB Transcription factors All genes
Deinococcus radiodurans R1 Transcription factors All genes
Microcystis aeruginosa NIES-843 Transcription factors All genes
Dehalococcoides sp. CBDB1 Transcription factors All genes
Methanosarcina mazei Go1 Transcription factors All genes
Thermococcus kodakarensis KOD1 Transcription factors All genes
Bifidobacterium adolescentis ATCC 15703 Transcription factors All genes
Cyanothece sp. ATCC 51142 Transcription factors All genes
Thermotoga lettingae TMO Transcription factors All genes
Methanosarcina barkeri fusaro Transcription factors All genes
Acidothermus cellulolyticus 11B Transcription factors All genes
Lactobacillus fermentum IFO 3956 Transcription factors All genes
Pelodictyon phaeoclathratiforme BU-1 Transcription factors All genes
Schizosaccharomyces japonicus yFS275  Transcription factors All genes
Streptococcus thermophilus LMD-9 Transcription factors All genes
Thiobacillus denitrificans ATCC 25259 Transcription factors All genes
Desulfococcus oleovorans Hxd3 Transcription factors All genes
Desulfotalea psychrophila LSv54 Transcription factors All genes
Legionella pneumophila Paris Transcription factors All genes
Archaeoglobus fulgidus DSM 4304 Transcription factors All genes
Legionella pneumophila Lens Transcription factors All genes
Nitrosococcus oceani ATCC 19707 Transcription factors All genes
Ostreococcus lucimarinus CCE9901  Transcription factors All genes
Schizosaccharomyces pombe Transcription factors All genes
Schizosaccharomyces pombe 972h-  Transcription factors All genes
Legionella pneumophila Corby Transcription factors All genes
Actinobacillus pleuropneumoniae ser. 7 AP76 Transcription factors All genes
Heliobacterium modesticaldum Ice1 Transcription factors All genes
Legionella pneumophila ssp. pneumophila Philadelphia 1 Transcription factors All genes
Salinibacter ruber DSM 13855 Transcription factors All genes
Aureococcus anophagefferens  Transcription factors All genes
Sporobolomyces roseus  Transcription factors All genes
Corynebacterium diphtheriae NCTC 13129 Transcription factors All genes
Dehalococcoides ethenogenes 195 Transcription factors All genes
Deinococcus geothermalis DSM 11300 Transcription factors All genes
Nitrosomonas europaea ATCC 19718 Transcription factors All genes
Psychrobacter cryohalolentis K5 Transcription factors All genes
Streptococcus thermophilus CNRZ1066 Transcription factors All genes
Streptococcus thermophilus LMG 18311 Transcription factors All genes
Syntrophomonas wolfei ssp. wolfei Goettingen Transcription factors All genes
Synechococcus sp. JA-3-3Ab Transcription factors All genes
Natronomonas pharaonis DSM 2160 Transcription factors All genes
Lactobacillus helveticus DPC 4571 Transcription factors All genes
Metallosphaera sedula DSM 5348 Transcription factors All genes
Ostreococcus sp. RCC809  Transcription factors All genes
Schizosaccharomyces octosporus yFS286  Transcription factors All genes
Actinobacillus pleuropneumoniae L20 Transcription factors All genes
Methylococcus capsulatus Bath Transcription factors All genes
uncultured methanogenic archaeon RC-I Transcription factors All genes
Actinobacillus pleuropneumoniae ser. 3 JL03 Transcription factors All genes
Bartonella tribocorum CIP 105476 Transcription factors All genes
Pelodictyon luteolum DSM 273 Transcription factors All genes
Xylella fastidiosa 9a5c Transcription factors All genes
Haloquadratum walsbyi DSM 16790 Transcription factors All genes
Malassezia globosa CBS 7966  Transcription factors All genes
Haemophilus somnus 2336 Transcription factors All genes
Wolinella succinogenes DSM 1740 Transcription factors All genes
Sulfolobus acidocaldarius DSM 639 Transcription factors All genes
Ostreococcus tauri  Transcription factors All genes
Lactobacillus delbrueckii ssp. bulgaricus ATCC BAA-365 Transcription factors All genes
Pasteurella multocida ssp. multocida Pm70 Transcription factors All genes
Haemophilus influenzae 86-028NP Transcription factors All genes
Halorhodospira halophila SL1 Transcription factors All genes
Pyrococcus abyssi GE5 Transcription factors All genes
Corynebacterium jeikeium K411 Transcription factors All genes
Finegoldia magna ATCC 29328 Transcription factors All genes
Nitrosospira multiformis ATCC 25196 Transcription factors All genes
Sulfurovum sp. NBC37-1 Transcription factors All genes
Leptospira interrogans ser. Lai 56601 Transcription factors All genes
Synechocystis sp. PCC 6803 Transcription factors All genes
Pyrococcus furiosus DSM 3638 Transcription factors All genes
Pyrococcus horikoshii OT3 Transcription factors All genes
Naegleria gruberi  Transcription factors All genes
Dehalococcoides sp. BAV1 Transcription factors All genes
Haemophilus somnus 129PT Transcription factors All genes
Leptospira interrogans ser. Copenhageni Fiocruz L1-130 Transcription factors All genes
Candidatus Methanoregula boonei 6A8 Transcription factors All genes
Haemophilus influenzae Rd KW20 Transcription factors All genes
Leptospira borgpetersenii ser. Hardjo-bovis L550 Transcription factors All genes
Psychrobacter sp. PRwf-1 Transcription factors All genes
Caldivirga maquilingensis IC-167 Transcription factors All genes
Corynebacterium urealyticum DSM 7109 Transcription factors All genes
Haemophilus influenzae PittEE Transcription factors All genes
Nitrosomonas eutropha C91 Transcription factors All genes
Thermotoga maritima MSB8 Transcription factors All genes
Thermotoga petrophila RKU-1 Transcription factors All genes
Treponema denticola ATCC 35405 Transcription factors All genes
Zymomonas mobilis ssp. mobilis ZM4 Transcription factors All genes
Lactobacillus delbrueckii ssp. bulgaricus ATCC 11842 Transcription factors All genes
Xylella fastidiosa M23 Transcription factors All genes
Chloroherpeton thalassium ATCC 35110 Transcription factors All genes
Flavobacterium psychrophilum JIP02/86 Transcription factors All genes
Fusobacterium nucleatum ssp. nucleatum ATCC 25586 Transcription factors All genes
Haemophilus influenzae PittGG Transcription factors All genes
Psychrobacter arcticus 273-4 Transcription factors All genes
Xylella fastidiosa M12 Transcription factors All genes
Halobacterium sp. NRC-1 Transcription factors All genes
Methanospirillum hungatei JF-1 Transcription factors All genes
Candidatus Desulforudis audaxviator MP104C Transcription factors All genes
Chlorobium phaeobacteroides BS1 Transcription factors All genes
Leptospira borgpetersenii ser. Hardjo-bovis JB197 Transcription factors All genes
Neisseria gonorrhoeae NCCP11945 Transcription factors All genes
Petrotoga mobilis SJ95 Transcription factors All genes
Xylella fastidiosa Temecula1 Transcription factors All genes
Cyanidioschyzon merolae Transcription factors All genes
Thermotoga sp. RQ2 Transcription factors All genes
Halobacterium salinarum R1 Transcription factors All genes
Methanococcoides burtonii DSM 6242 Transcription factors All genes
Methanoculleus marisnigri JR1 Transcription factors All genes
Thermofilum pendens Hrk 5 Transcription factors All genes
Trypanosoma cruzi Transcription factors All genes
Synechococcus elongatus PCC 7942 Transcription factors All genes
Thermus thermophilus HB27 Transcription factors All genes
Thiomicrospira crunogena XCL-2 Transcription factors All genes
Pyrobaculum arsenaticum DSM 13514 Transcription factors All genes
Thermoplasma acidophilum DSM 1728 Transcription factors All genes
Acholeplasma laidlawii PG-8A Transcription factors All genes
Chlorobium phaeobacteroides DSM 266 Transcription factors All genes
Synechococcus elongatus PCC 6301 Transcription factors All genes
Synechococcus sp. JA-2-3Ba(2-13) Transcription factors All genes
Synechococcus sp. PCC 7002 Transcription factors All genes
Pyrobaculum aerophilum IM2 Transcription factors All genes
Entamoeba histolytica 1 Transcription factors All genes
Bartonella henselae Houston-1 Transcription factors All genes
Methylacidiphilum infernorum V4 Transcription factors All genes
Neisseria gonorrhoeae FA 1090 Transcription factors All genes
Thermus thermophilus HB8 Transcription factors All genes
Neisseria meningitidis FAM18 Transcription factors All genes
Neisseria meningitidis MC58 Transcription factors All genes
Polynucleobacter sp. QLW-P1DMWA-1 Transcription factors All genes
Sulfurimonas denitrificans DSM 1251 Transcription factors All genes
Neisseria meningitidis Z2491 Transcription factors All genes
Methanococcus maripaludis C5 Transcription factors All genes
Thermoplasma volcanium GSS1 Transcription factors All genes
Chlorobium chlorochromatii CaD3 Transcription factors All genes
Thermosipho melanesiensis BI429 Transcription factors All genes
Trichodesmium erythraeum IMS101 Transcription factors All genes
Candidatus Korarchaeum cryptofilum OPF8 Transcription factors All genes
Campylobacter curvus 525.92 Transcription factors All genes
Prosthecochloris vibrioformis DSM 265 Transcription factors All genes
Methanocaldococcus jannaschii DSM 2661 Transcription factors All genes
Methanocorpusculum labreanum Z Transcription factors All genes
Pyrobaculum calidifontis JCM 11548 Transcription factors All genes
Coxiella burnetii Dugway 7E9-12 Transcription factors All genes
Synechococcus sp. CC9311 Transcription factors All genes
Thermoproteus neutrophilus V24Sta Transcription factors All genes
Porphyromonas gingivalis W83 Transcription factors All genes
Thermosynechococcus elongatus BP-1 Transcription factors All genes
Methanococcus maripaludis S2 Transcription factors All genes
Methanococcus vannielii SB Transcription factors All genes
Nitrosopumilus maritimus SCM1 Transcription factors All genes
Picrophilus torridus DSM 9790 Transcription factors All genes
Hyperthermus butylicus DSM 5456 Transcription factors All genes
Fervidobacterium nodosum Rt17-B1 Transcription factors All genes
Neisseria meningitidis 053442 Transcription factors All genes
Synechococcus sp. RCC307 Transcription factors All genes
Synechococcus sp. WH 7803 Transcription factors All genes
Synechococcus sp. WH 8102 Transcription factors All genes
Methanococcus maripaludis C6 Transcription factors All genes
Methanothermobacter thermautotrophicus Delta H Transcription factors All genes
Encephalitozoon cuniculi Transcription factors All genes
Mycobacterium leprae TN Transcription factors All genes
Prosthecochloris aestuarii DSM 271 Transcription factors All genes
Sulfurihydrogenibium sp. YO3AOP1 Transcription factors All genes
Methanococcus maripaludis C7 Transcription factors All genes
Akkermansia muciniphila ATCC BAA-835 Transcription factors All genes
Haemophilus ducreyi 35000HP Transcription factors All genes
Aeropyrum pernix K1 Transcription factors All genes
Pyrobaculum islandicum DSM 4184 Transcription factors All genes
Staphylothermus marinus F1 Transcription factors All genes
Francisella philomiragia ssp. philomiragia ATCC 25017 Transcription factors All genes
Francisella tularensis ssp. tularensis WY96-3418 Transcription factors All genes
Porphyromonas gingivalis ATCC 33277 Transcription factors All genes
Trypanosoma brucei Transcription factors All genes
Francisella tularensis ssp. novicida U112 Transcription factors All genes
Nitratiruptor sp. SB155-2 Transcription factors All genes
Prochlorococcus marinus MIT 9313 Transcription factors All genes
Synechococcus sp. CC9902 Transcription factors All genes
Campylobacter fetus ssp. fetus 82-40 Transcription factors All genes
Coxiella burnetii RSA 493 Transcription factors All genes
Prochlorococcus marinus MIT 9303 Transcription factors All genes
Synechococcus sp. CC9605 Transcription factors All genes
Leishmania major 100505 Transcription factors All genes
Chlorobaculum parvum NCIB 8327 Transcription factors All genes
Coxiella burnetii RSA 331 Transcription factors All genes
Francisella tularensis ssp. tularensis FSC198 Transcription factors All genes
Francisella tularensis ssp. tularensis SCHU S4 Transcription factors All genes
Hydrogenobaculum sp. Y04AAS1 Transcription factors All genes
Leishmania braziliensis MHOM/BR/75/M2904  Transcription factors All genes
Rickettsia bellii RML369-C Transcription factors All genes
Methanobrevibacter smithii ATCC 35061 Transcription factors All genes
Methanococcus aeolicus Nankai-3 Transcription factors All genes
Bartonella quintana Toulouse Transcription factors All genes
Rickettsia bellii OSU 85-389 Transcription factors All genes
Leishmania infantum JPCM5  Transcription factors All genes
Chlorobium tepidum TLS Transcription factors All genes
Elusimicrobium minutum Pei191 Transcription factors All genes
Francisella tularensis ssp. holarctica Transcription factors All genes
Bartonella bacilliformis KC583 Transcription factors All genes
Campylobacter concisus 13826 Transcription factors All genes
Francisella tularensis ssp. holarctica FTNF002-00 Transcription factors All genes
Polynucleobacter necessarius STIR1 Transcription factors All genes
Cryptosporidium parvum Iowa II Transcription factors All genes
Aquifex aeolicus VF5 Transcription factors All genes
Campylobacter jejuni ssp. jejuni NCTC 11168 Transcription factors All genes
Candidatus Pelagibacter ubique HTCC1062 Transcription factors All genes
Dichelobacter nodosus VCS1703A Transcription factors All genes
Francisella tularensis ssp. mediasiatica FSC147 Transcription factors All genes
Methanosaeta thermophila PT Transcription factors All genes
Methanosphaera stadtmanae DSM 3091 Transcription factors All genes
Campylobacter hominis ATCC BAA-381 Transcription factors All genes
Campylobacter jejuni RM1221 Transcription factors All genes
Campylobacter jejuni ssp. jejuni 81-176 Transcription factors All genes
Campylobacter jejuni ssp. jejuni 81116 Transcription factors All genes
Francisella tularensis ssp. holarctica OSU18 Transcription factors All genes
Helicobacter hepaticus ATCC 51449 Transcription factors All genes
Prochlorococcus marinus NATL1A Transcription factors All genes
Prochlorococcus marinus NATL2A Transcription factors All genes
Prochlorococcus marinus ssp. marinus CCMP1375 Transcription factors All genes
Prochlorococcus marinus ssp. pastoris CCMP1986 Transcription factors All genes
Plasmodium chabaudi  Transcription factors All genes
Toxoplasma gondii RH  Transcription factors All genes
Prochlorococcus marinus MIT 9211 Transcription factors All genes
Prochlorococcus marinus MIT 9301 Transcription factors All genes
Prochlorococcus marinus MIT 9312 Transcription factors All genes
Methanopyrus kandleri AV19 Transcription factors All genes
Cryptosporidium hominis Transcription factors All genes
Plasmodium falciparum 3D7 2.1 Transcription factors All genes
Campylobacter jejuni ssp. doylei 269.97 Transcription factors All genes
Lawsonia intracellularis PHE/MN1-00 Transcription factors All genes
Prochlorococcus marinus MIT 9515 Transcription factors All genes
Rickettsia felis URRWXCal2 Transcription factors All genes
Ignicoccus hospitalis KIN4/I Transcription factors All genes
Candidatus Protochlamydia amoebophila UWE25 Transcription factors All genes
Mesoplasma florum L1 Transcription factors All genes
Prochlorococcus marinus AS9601 Transcription factors All genes
Prochlorococcus marinus MIT 9215 Transcription factors All genes
Plasmodium berghei ANKA  Transcription factors All genes
Plasmodium vivax SaI-1  Transcription factors All genes
Plasmodium yoelii ssp. yoelii 1 Transcription factors All genes
Theileria parva 1 Transcription factors All genes
Rickettsia conorii Malish 7 Transcription factors All genes
Rickettsia rickettsii Iowa Transcription factors All genes
Rickettsia rickettsii Sheila Smith Transcription factors All genes
Plasmodium knowlesi  Transcription factors All genes
Theileria annulata Transcription factors All genes
Candidatus Amoebophilus asiaticus 5a2 Transcription factors All genes
Mycoplasma penetrans HF-2 Transcription factors All genes
Rickettsia massiliae MTU5 Transcription factors All genes
Giardia lamblia  Transcription factors All genes
Candidatus Ruthia magnifica Cm Transcription factors All genes
Wolbachia endosymbiont of Drosophila melanogaster Transcription factors All genes
Wolbachia pipientis Transcription factors All genes
Ehrlichia ruminantium Gardel Transcription factors All genes
Ehrlichia ruminantium Welgevonden Transcription factors All genes
Mycoplasma capricolum ssp. capricolum ATCC 27343 Transcription factors All genes
Orientia tsutsugamushi Ikeda Transcription factors All genes
Rickettsia akari Hartford Transcription factors All genes
Tropheryma whipplei TW08/27 Transcription factors All genes
Tropheryma whipplei Twist Transcription factors All genes
Wigglesworthia glossinidia Transcription factors All genes
Baumannia cicadellinicola Hc Transcription factors All genes
Candidatus Vesicomyosocius okutanii HA Transcription factors All genes
Ehrlichia canis Jake Transcription factors All genes
Ehrlichia chaffeensis Arkansas Transcription factors All genes
Ehrlichia ruminantium Welgevonden Transcription factors All genes
Helicobacter pylori HPAG1 Transcription factors All genes
Mycoplasma mycoides ssp. mycoides SC PG1 Transcription factors All genes
Orientia tsutsugamushi Boryong Transcription factors All genes
Rickettsia canadensis McKiel Transcription factors All genes
Rickettsia prowazekii Madrid E Transcription factors All genes
Anaplasma marginale St. Maries Transcription factors All genes
Anaplasma phagocytophilum HZ Transcription factors All genes
Candidatus Blochmannia floridanus Transcription factors All genes
Candidatus Blochmannia pennsylvanicus BPEN Transcription factors All genes
Helicobacter pylori 26695 Transcription factors All genes
Helicobacter pylori J99 Transcription factors All genes
Helicobacter pylori Shi470 Transcription factors All genes
Rickettsia typhi Wilmington Transcription factors All genes
Helicobacter acinonychis Sheeba Transcription factors All genes
Neorickettsia sennetsu Miyayama Transcription factors All genes
Chlamydophila caviae GPIC Transcription factors All genes
Chlamydophila felis Fe/C-56 Transcription factors All genes
Treponema pallidum ssp. pallidum Nichols Transcription factors All genes
Treponema pallidum ssp. pallidum SS14 Transcription factors All genes
Nanoarchaeum equitans Kin4-M Transcription factors All genes
Borrelia afzelii PKo Transcription factors All genes
Borrelia burgdorferi B31 Transcription factors All genes
Buchnera aphidicola APS Transcription factors All genes
Buchnera aphidicola Sg Transcription factors All genes
Mycoplasma mobile 163K Transcription factors All genes
Wolbachia endosymbiont TRS of Brugia malayi Transcription factors All genes
Borrelia garinii PBi Transcription factors All genes
Borrelia turicatae 91E135 Transcription factors All genes
Buchnera aphidicola Cc Transcription factors All genes
Candidatus Phytoplasma mali Transcription factors All genes
Chlamydia trachomatis 434/Bu Transcription factors All genes
Chlamydia trachomatis A/HAR-13 Transcription factors All genes
Chlamydia trachomatis D/UW-3/CX Transcription factors All genes
Chlamydia trachomatis L2b/UCH-1/proctitis Transcription factors All genes
Chlamydophila abortus S26/3 Transcription factors All genes
Chlamydophila pneumoniae AR39 Transcription factors All genes
Chlamydophila pneumoniae CWL029 Transcription factors All genes
Chlamydophila pneumoniae J138 Transcription factors All genes
Chlamydophila pneumoniae TW-183 Transcription factors All genes
Mycoplasma agalactiae PG2 Transcription factors All genes
Mycoplasma hyopneumoniae 232 Transcription factors All genes
Mycoplasma hyopneumoniae 7448 Transcription factors All genes
Mycoplasma hyopneumoniae J Transcription factors All genes
Mycoplasma synoviae 53 Transcription factors All genes
Ureaplasma parvum ser. 3 ATCC 27815 Transcription factors All genes
Ureaplasma parvum ser. 3 ATCC 700970 Transcription factors All genes
Aster yellows witches-broom phytoplasma AYWB Transcription factors All genes
Buchnera aphidicola Bp Transcription factors All genes
Candidatus Carsonella ruddii PV Transcription factors All genes
Mycoplasma arthritidis 158L3-1 Transcription factors All genes
Mycoplasma gallisepticum R Transcription factors All genes
Mycoplasma pneumoniae M129 Transcription factors All genes
Mycoplasma pulmonis UAB CTIP Transcription factors All genes
Onion yellows phytoplasma OY-M Transcription factors All genes
Candidatus Sulcia muelleri GWSS Transcription factors All genes
Chlamydia muridarum Nigg Transcription factors All genes
Mycoplasma genitalium G37 Transcription factors All genes

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Please cite: Derek Wilson, Varodom Charoensawan, Sarah K. Kummerfeld and Sarah A. Teichmann, DBD - taxonomically broad transcription factor predictions: new content and functionality Nucleic Acids Research 2008 doi: 10.1093/nar/gkm964.

Please send feedback, comments or questions to Sarah A. Teichmann.

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