DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Rickettsia rickettsii Iowa
Taxonomy: Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group
source (downloaded: 2008-05-03)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
gi|165933092|ref|YP_001649881.1| External link 8x SF
  8x PF
gi|165933191|ref|YP_001649980.1| External link 8x SF
  8x PF
gi|165933433|ref|YP_001650222.1| External link 8x SF
  8x PF
gi|165932668|ref|YP_001649457.1| External link 8x SF
  8x PF
gi|165933182|ref|YP_001649971.1| External link 8x SF
  8x PF
gi|165933601|ref|YP_001650390.1| External link 8x SF
  8x PF
gi|165933751|ref|YP_001650540.1| External link 8x SF
  8x PF
gi|165933781|ref|YP_001650570.1| External link 8x SF
  8x PF
gi|165933258|ref|YP_001650047.1| External link 8x SF
  8x PF
gi|165933334|ref|YP_001650123.1| External link 8x SF
  8x PF
gi|165933723|ref|YP_001650512.1| External link 8x SF
  8x PF No hits
gi|165932622|ref|YP_001649411.1| External link 8x SF
  8x PF No hits
gi|165933321|ref|YP_001650110.1| External link 8x SF
  8x PF
gi|165933410|ref|YP_001650199.1| External link 8x SF
  8x PF
gi|165933822|ref|YP_001650611.1| External link 8x SF
  8x PF