DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Arabidopsis thaliana 8 (longest transcript per gene)
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis
source (downloaded: 2008-02-22)
local copy of protein fasta file

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
AT1G25280.1 External link ad SF
  ad PF
AT1G12860.1 External link ad SF
  ad PF
AT5G60410.2 External link ad SF
  ad PF
AT1G16710.1 External link ad SF
  ad PF
AT1G79000.1 External link ad SF
  ad PF
AT3G12980.1 External link ad SF
  ad PF
AT1G55970.1 External link ad SF
  ad PF
AT1G67220.1 External link ad SF
  ad PF
AT3G19510.1 External link ad SF
  ad PF
AT4G29940.1 External link ad SF
  ad PF
AT5G35210.1 External link ad SF
  ad PF
AT5G22760.1 External link ad SF
  ad PF
AT1G10170.1 External link ad SF
  ad PF
AT5G05660.1 External link ad SF
  ad PF
AT5G41580.1 External link ad SF
  ad PF
AT3G42860.1 External link ad SF
  ad PF
AT1G54930.1 External link ad SF
  ad PF
AT5G13920.1 External link ad SF
  ad PF
AT1G51600.1 External link ad SF
  ad PF
AT5G66320.1 External link ad SF
  ad PF
AT3G50870.1 External link ad SF
  ad PF
AT5G56860.1 External link ad SF
  ad PF
AT3G21175.1 External link ad SF
  ad PF
AT2G45050.1 External link ad SF
  ad PF
AT3G45170.1 External link ad SF
  ad PF
AT4G36240.1 External link ad SF
  ad PF
AT4G36620.1 External link ad SF
  ad PF
AT5G49300.1 External link ad SF
  ad PF
AT4G32890.1 External link ad SF
  ad PF
AT3G24050.1 External link ad SF
  ad PF
AT3G06740.1 External link ad SF
  ad PF
AT3G60530.1 External link ad SF
  ad PF
AT5G25830.1 External link ad SF
  ad PF
AT4G34680.1 External link ad SF
  ad PF
AT3G20750.1 External link ad SF
  ad PF
AT2G18380.1 External link ad SF
  ad PF
AT3G16870.1 External link ad SF
  ad PF
AT5G26930.1 External link ad SF
  ad PF
AT4G24470.1 External link ad SF
  ad PF
AT1G08010.1 External link ad SF
  ad PF
AT2G28340.1 External link ad SF
  ad PF
AT4G26150.1 External link ad SF
  ad PF
AT4G17570.1 External link ad SF
  ad PF
AT3G54810.1 External link ad SF
  ad PF
AT1G08000.1 External link ad SF
  ad PF
AT3G51080.1 External link ad SF
  ad PF
AT5G47140.1 External link ad SF
  ad PF
AT1G08290.1 External link ad SF
  ad PF
AT5G66730.1 External link ad SF
  ad PF
AT5G67450.1 External link ad SF
  ad PF