DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Batrachochytrium dendrobatidis JAM81
Taxonomy: Eukaryota; Fungi; Chytridiomycota; Chytridiomycetes; Chytridiales; Chytridiales incertae sedis; Batrachochytrium
source (downloaded: 2008-05-22)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Batde5|29046|fgenesh1_pg.C_scaffold_203000001 External link b9 SF
  b9 PF
jgi|Batde5|86581|GP3.021400 External link b9 SF
  b9 PF
jgi|Batde5|22293|fgenesh1_pg.C_scaffold_1001166 External link b9 SF
  b9 PF
jgi|Batde5|14986|e_gw1.23.7.1 External link b9 SF
  b9 PF
jgi|Batde5|21917|fgenesh1_pg.C_scaffold_1000790 External link b9 SF
  b9 PF No hits
jgi|Batde5|34165|estExt_fgenesh1_pg.C_10944 External link b9 SF
  b9 PF
jgi|Batde5|21487|fgenesh1_pg.C_scaffold_1000360 External link b9 SF
  b9 PF
jgi|Batde5|37200|estExt_fgenesh1_kg.C_90054 External link b9 SF
  b9 PF
jgi|Batde5|85119|GP3.006780 External link b9 SF
  b9 PF
jgi|Batde5|34264|estExt_fgenesh1_pg.C_11201 External link b9 SF
  b9 PF
jgi|Batde5|85624|GP3.011830 External link b9 SF
  b9 PF
jgi|Batde5|25231|fgenesh1_pg.C_scaffold_6000460 External link b9 SF
  b9 PF
jgi|Batde5|27685|fgenesh1_pg.C_scaffold_14000139 External link b9 SF
  b9 PF
jgi|Batde5|25711|fgenesh1_pg.C_scaffold_8000043 External link b9 SF
  b9 PF
jgi|Batde5|25928|fgenesh1_pg.C_scaffold_8000260 External link b9 SF
  b9 PF
jgi|Batde5|28286|fgenesh1_pg.C_scaffold_17000113 External link b9 SF
  b9 PF
jgi|Batde5|14180|e_gw1.14.234.1 External link b9 SF
  b9 PF
jgi|Batde5|91771|GP3.073300 External link b9 SF
  b9 PF
jgi|Batde5|22806|fgenesh1_pg.C_scaffold_2000193 External link b9 SF
  b9 PF
jgi|Batde5|91698|GP3.072570 External link b9 SF
  b9 PF
jgi|Batde5|91760|GP3.073190 External link b9 SF
  b9 PF
jgi|Batde5|91677|GP3.072360 External link b9 SF
  b9 PF
jgi|Batde5|34038|estExt_fgenesh1_pg.C_10541 External link b9 SF
  b9 PF
jgi|Batde5|36027|estExt_fgenesh1_pg.C_140113 External link b9 SF
  b9 PF
jgi|Batde5|34236|estExt_fgenesh1_pg.C_11107 External link b9 SF
  b9 PF
jgi|Batde5|36629|estExt_fgenesh1_kg.C_20062 External link b9 SF
  b9 PF
jgi|Batde5|21501|fgenesh1_pg.C_scaffold_1000374 External link b9 SF
  b9 PF
jgi|Batde5|3760|gw1.13.134.1 External link b9 SF
  b9 PF
jgi|Batde5|88139|GP3.036980 External link b9 SF
  b9 PF
jgi|Batde5|12478|e_gw1.8.403.1 External link b9 SF
  b9 PF
jgi|Batde5|86453|GP3.020120 External link b9 SF
  b9 PF No hits
jgi|Batde5|7345|gw1.1.1416.1 External link b9 SF
  b9 PF
jgi|Batde5|87179|GP3.027380 External link b9 SF
  b9 PF
jgi|Batde5|9844|e_gw1.2.602.1 External link b9 SF
  b9 PF
jgi|Batde5|34742|estExt_fgenesh1_pg.C_40097 External link b9 SF
  b9 PF
jgi|Batde5|9451|e_gw1.2.603.1 External link b9 SF
  b9 PF
jgi|Batde5|27309|fgenesh1_pg.C_scaffold_13000020 External link b9 SF
  b9 PF
jgi|Batde5|37271|estExt_fgenesh1_kg.C_100062 External link b9 SF
  b9 PF
jgi|Batde5|25104|fgenesh1_pg.C_scaffold_6000333 External link b9 SF
  b9 PF
jgi|Batde5|7423|gw1.3.530.1 External link b9 SF
  b9 PF
jgi|Batde5|7331|gw1.1.1413.1 External link b9 SF
  b9 PF
jgi|Batde5|90719|GP3.062780 External link b9 SF
  b9 PF
jgi|Batde5|91921|GP3.074800 External link b9 SF
  b9 PF
jgi|Batde5|87176|GP3.027350 External link b9 SF
  b9 PF
jgi|Batde5|10759|e_gw1.4.527.1 External link b9 SF
  b9 PF
jgi|Batde5|7454|gw1.3.533.1 External link b9 SF
  b9 PF
jgi|Batde5|7483|gw1.1.1448.1 External link b9 SF
  b9 PF
jgi|Batde5|7429|gw1.5.439.1 External link b9 SF
  b9 PF No hits
jgi|Batde5|22333|fgenesh1_pg.C_scaffold_1001206 External link b9 SF
  b9 PF
jgi|Batde5|33683|estExt_fgenesh1_pm.C_130067 External link b9 SF
  b9 PF