DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Branchiostoma floridae 1.0
Taxonomy: Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma
source (downloaded: 2007-06-29)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Brafl1|178190|gw.285.88.1 External link bf SF
  bf PF
jgi|Brafl1|151811|gw.943.3.1 External link bf SF
  bf PF No hits
jgi|Brafl1|83561|fgenesh2_pg.scaffold_122000051 External link bf SF
  bf PF
jgi|Brafl1|233458|e_gw.304.115.1 External link bf SF
  bf PF
jgi|Brafl1|212199|e_gw.48.246.1 External link bf SF
  bf PF
jgi|Brafl1|233494|e_gw.304.55.1 External link bf SF
  bf PF
jgi|Brafl1|65698|fgenesh2_pg.scaffold_8000084 External link bf SF
  bf PF
jgi|Brafl1|126562|estExt_fgenesh2_pg.C_2190045 External link bf SF
  bf PF
jgi|Brafl1|246825|e_gw.480.17.1 External link bf SF
  bf PF
jgi|Brafl1|92191|fgenesh2_pg.scaffold_219000049 External link bf SF
  bf PF
jgi|Brafl1|69907|fgenesh2_pg.scaffold_25000175 External link bf SF
  bf PF
jgi|Brafl1|92186|fgenesh2_pg.scaffold_219000044 External link bf SF
  bf PF
jgi|Brafl1|256003|e_gw.768.12.1 External link bf SF
  bf PF
jgi|Brafl1|256007|e_gw.768.14.1 External link bf SF
  bf PF
jgi|Brafl1|126565|estExt_fgenesh2_pg.C_2190050 External link bf SF
  bf PF
jgi|Brafl1|94615|fgenesh2_pg.scaffold_256000020 External link bf SF
  bf PF No hits
jgi|Brafl1|240852|e_gw.386.8.1 External link bf SF
  bf PF
jgi|Brafl1|224915|e_gw.104.41.1 External link bf SF
  bf PF
jgi|Brafl1|145480|gw.504.9.1 External link bf SF
  bf PF
jgi|Brafl1|105710|fgenesh2_pg.scaffold_504000008 External link bf SF
  bf PF
jgi|Brafl1|90731|fgenesh2_pg.scaffold_201000036 External link bf SF
  bf PF
jgi|Brafl1|82922|fgenesh2_pg.scaffold_116000028 External link bf SF
  bf PF
jgi|Brafl1|235681|e_gw.326.4.1 External link bf SF
  bf PF
jgi|Brafl1|124039|estExt_fgenesh2_pg.C_1360008 External link bf SF
  bf PF
jgi|Brafl1|85004|fgenesh2_pg.scaffold_137000046 External link bf SF
  bf PF
jgi|Brafl1|132230|estExt_fgenesh2_pg.C_6580007 External link bf SF
  bf PF
jgi|Brafl1|75725|fgenesh2_pg.scaffold_59000072 External link bf SF
  bf PF
jgi|Brafl1|105252|fgenesh2_pg.scaffold_489000019 External link bf SF
  bf PF
jgi|Brafl1|199222|e_gw.1.37.1 External link bf SF
  bf PF
jgi|Brafl1|75720|fgenesh2_pg.scaffold_59000067 External link bf SF
  bf PF
jgi|Brafl1|229502|e_gw.264.25.1 External link bf SF
  bf PF
jgi|Brafl1|123562|estExt_fgenesh2_pg.C_1230031 External link bf SF
  bf PF
jgi|Brafl1|131876|estExt_fgenesh2_pg.C_5980016 External link bf SF
  bf PF
jgi|Brafl1|123561|estExt_fgenesh2_pg.C_1230027 External link bf SF
  bf PF
jgi|Brafl1|84620|fgenesh2_pg.scaffold_133000006 External link bf SF
  bf PF
jgi|Brafl1|126580|estExt_fgenesh2_pg.C_2200017 External link bf SF
  bf PF
jgi|Brafl1|131195|estExt_fgenesh2_pg.C_5050022 External link bf SF
  bf PF
jgi|Brafl1|223199|e_gw.95.98.1 External link bf SF
  bf PF
jgi|Brafl1|213271|e_gw.53.180.1 External link bf SF
  bf PF
jgi|Brafl1|82805|fgenesh2_pg.scaffold_115000027 External link bf SF
  bf PF
jgi|Brafl1|126069|estExt_fgenesh2_pg.C_2030042 External link bf SF
  bf PF
jgi|Brafl1|245816|e_gw.461.45.1 External link bf SF
  bf PF
jgi|Brafl1|200485|e_gw.5.778.1 External link bf SF
  bf PF
jgi|Brafl1|123398|estExt_fgenesh2_pg.C_1190055 External link bf SF
  bf PF
jgi|Brafl1|183675|gw.95.108.1 External link bf SF
  bf PF
jgi|Brafl1|194147|gw.71.240.1 External link bf SF
  bf PF
jgi|Brafl1|279826|estExt_gwp.C_710063 External link bf SF
  bf PF
jgi|Brafl1|86462|fgenesh2_pg.scaffold_152000009 External link bf SF
  bf PF
jgi|Brafl1|99008|fgenesh2_pg.scaffold_333000035 External link bf SF
  bf PF
jgi|Brafl1|125331|estExt_fgenesh2_pg.C_1780033 External link bf SF
  bf PF