DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Bacillus subtilis ssp. subtilis 168
Taxonomy: Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus
source (downloaded: 2007-08-14)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
gi|16077124|ref|NP_387937.1| External link bs SF
Gene name: spoVT  bs PF
gi|16078512|ref|NP_389331.1| External link bs SF
Gene name: abh  bs PF
gi|16077105|ref|NP_387918.1| External link bs SF
Gene name: abrB  bs PF
gi|16079901|ref|NP_390727.1| External link bs SF
Gene name: uvrC  bs PF
gi|16078265|ref|NP_389082.1| External link bs SF
Gene name: yjdC  bs PF
gi|16077249|ref|NP_388062.1| External link bs SF
Gene name: adaA  bs PF
gi|16081087|ref|NP_391915.1| External link bs SF
Gene name: rocR  bs PF
gi|16077877|ref|NP_388691.1| External link bs SF
Gene name: acoR  bs PF
gi|16077237|ref|NP_388050.1| External link bs SF
Gene name: ybbH  bs PF
gi|16077886|ref|NP_388700.1| External link bs SF
Gene name: yfiA  bs PF
gi|16077425|ref|NP_388238.1| External link bs SF
Gene name: ycxD  bs PF
gi|16080354|ref|NP_391181.1| External link bs SF
Gene name: yvqA  bs PF
gi|16077269|ref|NP_388082.1| External link bs SF
Gene name: ybdJ  bs PF
gi|16080219|ref|NP_391046.1| External link bs SF
Gene name: comA  bs PF
gi|16080459|ref|NP_391286.1| External link bs SF
Gene name: yvfU  bs PF
gi|16079478|ref|NP_390302.1| External link bs SF
Gene name: spo0A  bs PF
gi|16080942|ref|NP_391770.1| External link bs SF
Gene name: yxjL  bs PF
gi|16077897|ref|NP_388711.1| External link bs SF
Gene name: yfiK  bs PF
gi|16077609|ref|NP_388423.1| External link bs SF
Gene name: ydfI  bs PF
gi|16080361|ref|NP_391188.1| External link bs SF
Gene name: yvqC  bs PF
gi|16080602|ref|NP_391429.1| External link bs SF
Gene name: degU  bs PF
gi|16077998|ref|NP_388814.1| External link bs SF
Gene name: yhcZ  bs PF
gi|16078980|ref|NP_389801.1| External link bs SF
Gene name: yocG  bs PF
gi|16077763|ref|NP_388577.1| External link bs SF
Gene name: yesN  bs PF
gi|16078390|ref|NP_389208.1| External link bs SF
Gene name: ykoG  bs PF
gi|16077513|ref|NP_388327.1| External link bs SF
Gene name: ydbG  bs PF
gi|16080525|ref|NP_391352.1| External link bs SF
Gene name: yvcP  bs PF
gi|16077324|ref|NP_388137.1| External link bs SF
Gene name: ycbL  bs PF
gi|16079369|ref|NP_390193.1| External link bs SF
Gene name: resD  bs PF
gi|16080092|ref|NP_390918.1| External link bs SF
Gene name: ytsA  bs PF
gi|16079696|ref|NP_390520.1| External link bs SF
Gene name: yrkP  bs PF
gi|16081093|ref|NP_391921.1| External link bs SF
Gene name: yycF  bs PF
gi|16077826|ref|NP_388640.1| External link bs SF
Gene name: citT  bs PF
gi|16077443|ref|NP_388257.1| External link bs SF
Gene name: yclJ  bs PF
gi|16081017|ref|NP_391845.1| External link bs SF
Gene name: yxdJ  bs PF
gi|16077343|ref|NP_388156.1| External link bs SF
Gene name: yccH  bs PF
gi|16080375|ref|NP_391202.1| External link bs SF
Gene name: yvrH  bs PF
gi|16079944|ref|NP_390770.1| External link bs SF
Gene name: lytT  bs PF
gi|16079963|ref|NP_390789.1| External link bs SF
Gene name: phoP  bs PF
gi|16079466|ref|NP_390290.1| External link bs SF
Gene name: yqiR  bs PF
gi|16077892|ref|NP_388706.1| External link bs SF
Gene name: yfiF  bs PF
gi|16077291|ref|NP_388104.1| External link bs SF
Gene name: ybfI  bs PF
gi|16078146|ref|NP_388963.1| External link bs SF
Gene name: yisR  bs PF
gi|16080784|ref|NP_391612.1| External link bs SF
Gene name: fnr  bs PF
gi|16077582|ref|NP_388396.1| External link bs SF
Gene name: ydeC  bs PF
gi|16078965|ref|NP_389786.1| External link bs SF
Gene name: yobQ  bs PF
gi|16077975|ref|NP_388791.1| External link bs SF
Gene name: cspB  bs PF
gi|16077579|ref|NP_388393.1| External link bs SF
Gene name: cspC  bs PF
gi|16079252|ref|NP_390076.1| External link bs SF
Gene name: cspD  bs PF
gi|16077726|ref|NP_388540.1| External link bs SF
Gene name: yerC  bs PF