DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Bos taurus 49_3f (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSBTAP00000041941 External link bv SF
  bv PF
ENSBTAP00000010709 External link bv SF
  bv PF
ENSBTAP00000025010 External link bv SF
  bv PF No hits
ENSBTAP00000011942 External link bv SF
  bv PF
ENSBTAP00000010604 External link bv SF
  bv PF
ENSBTAP00000019971 External link bv SF
  bv PF
ENSBTAP00000025660 External link bv SF
  bv PF
ENSBTAP00000044643 External link bv SF
  bv PF
ENSBTAP00000001736 External link bv SF
  bv PF
ENSBTAP00000042796 External link bv SF
  bv PF No hits
ENSBTAP00000013742 External link bv SF
  bv PF
ENSBTAP00000001081 External link bv SF
  bv PF
ENSBTAP00000027421 External link bv SF
  bv PF
ENSBTAP00000032579 External link bv SF
  bv PF
ENSBTAP00000007661 External link bv SF
  bv PF
ENSBTAP00000013219 External link bv SF
  bv PF
ENSBTAP00000012736 External link bv SF
  bv PF
ENSBTAP00000031798 External link bv SF
  bv PF
ENSBTAP00000041250 External link bv SF
  bv PF
ENSBTAP00000019648 External link bv SF
  bv PF
ENSBTAP00000001544 External link bv SF
  bv PF
ENSBTAP00000020915 External link bv SF
  bv PF
ENSBTAP00000003849 External link bv SF
  bv PF
ENSBTAP00000037637 External link bv SF
  bv PF
ENSBTAP00000023131 External link bv SF
  bv PF
ENSBTAP00000002078 External link bv SF
  bv PF
ENSBTAP00000005092 External link bv SF
  bv PF
ENSBTAP00000021556 External link bv SF
  bv PF
ENSBTAP00000019441 External link bv SF
  bv PF
ENSBTAP00000035666 External link bv SF
  bv PF
ENSBTAP00000009493 External link bv SF
  bv PF
ENSBTAP00000042616 External link bv SF
  bv PF
ENSBTAP00000016436 External link bv SF
  bv PF
ENSBTAP00000042613 External link bv SF
  bv PF
ENSBTAP00000007314 External link bv SF
  bv PF
ENSBTAP00000033738 External link bv SF
  bv PF
ENSBTAP00000028829 External link bv SF
  bv PF
ENSBTAP00000001000 External link bv SF
  bv PF
ENSBTAP00000010308 External link bv SF
  bv PF
ENSBTAP00000010307 External link bv SF
  bv PF
ENSBTAP00000045009 External link bv SF
  bv PF
ENSBTAP00000045678 External link bv SF
  bv PF
ENSBTAP00000017945 External link bv SF
  bv PF
ENSBTAP00000041371 External link bv SF
  bv PF
ENSBTAP00000014582 External link bv SF
  bv PF
ENSBTAP00000025544 External link bv SF
  bv PF
ENSBTAP00000007267 External link bv SF
  bv PF
ENSBTAP00000004042 External link bv SF
  bv PF
ENSBTAP00000005216 External link bv SF
  bv PF
ENSBTAP00000044870 External link bv SF
  bv PF