DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Ciona savignyi 49_2f (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSCSAVP00000018470 External link c0 SF
  c0 PF
ENSCSAVP00000000574 External link c0 SF
  c0 PF
ENSCSAVP00000005722 External link c0 SF
  c0 PF
ENSCSAVP00000011763 External link c0 SF
  c0 PF
ENSCSAVP00000010882 External link c0 SF
  c0 PF
ENSCSAVP00000010881 External link c0 SF
  c0 PF
ENSCSAVP00000000875 External link c0 SF
  c0 PF
ENSCSAVP00000008085 External link c0 SF
  c0 PF
ENSCSAVP00000019680 External link c0 SF
  c0 PF
ENSCSAVP00000001840 External link c0 SF
  c0 PF
ENSCSAVP00000001841 External link c0 SF
  c0 PF
ENSCSAVP00000020060 External link c0 SF
  c0 PF
ENSCSAVP00000015546 External link c0 SF
  c0 PF
ENSCSAVP00000015545 External link c0 SF
  c0 PF
ENSCSAVP00000001628 External link c0 SF
  c0 PF
ENSCSAVP00000001629 External link c0 SF
  c0 PF
ENSCSAVP00000001064 External link c0 SF
  c0 PF
ENSCSAVP00000001638 External link c0 SF
  c0 PF
ENSCSAVP00000001063 External link c0 SF
  c0 PF
ENSCSAVP00000014251 External link c0 SF
  c0 PF
ENSCSAVP00000013993 External link c0 SF
  c0 PF
ENSCSAVP00000014252 External link c0 SF
  c0 PF
ENSCSAVP00000004524 External link c0 SF
  c0 PF
ENSCSAVP00000013348 External link c0 SF
  c0 PF
ENSCSAVP00000005522 External link c0 SF
  c0 PF
ENSCSAVP00000005523 External link c0 SF
  c0 PF
ENSCSAVP00000003417 External link c0 SF
  c0 PF
ENSCSAVP00000013350 External link c0 SF
  c0 PF
ENSCSAVP00000010272 External link c0 SF
  c0 PF
ENSCSAVP00000003227 External link c0 SF
  c0 PF
ENSCSAVP00000009501 External link c0 SF
  c0 PF
ENSCSAVP00000016984 External link c0 SF
  c0 PF
ENSCSAVP00000013351 External link c0 SF
  c0 PF
ENSCSAVP00000000134 External link c0 SF
  c0 PF
ENSCSAVP00000013349 External link c0 SF
  c0 PF
ENSCSAVP00000011583 External link c0 SF
  c0 PF
ENSCSAVP00000016983 External link c0 SF
  c0 PF
ENSCSAVP00000013352 External link c0 SF
  c0 PF
ENSCSAVP00000013353 External link c0 SF
  c0 PF
ENSCSAVP00000005524 External link c0 SF
  c0 PF
ENSCSAVP00000011584 External link c0 SF
  c0 PF
ENSCSAVP00000008270 External link c0 SF
  c0 PF
ENSCSAVP00000014254 External link c0 SF
  c0 PF
ENSCSAVP00000008968 External link c0 SF
  c0 PF
ENSCSAVP00000014468 External link c0 SF
  c0 PF
ENSCSAVP00000014813 External link c0 SF
  c0 PF
ENSCSAVP00000004523 External link c0 SF
  c0 PF
ENSCSAVP00000012457 External link c0 SF
  c0 PF
ENSCSAVP00000003097 External link c0 SF
  c0 PF
ENSCSAVP00000001198 External link c0 SF
  c0 PF