DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Caenorhabditis elegans WormBase WS147 (all transcripts)
Taxonomy: Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
source (downloaded: 2005-09-08)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
T22H9.4 External link ce SF
Gene name: CE33328  ce PF
Y53C12B.5a External link ce SF
Gene name: CE14902  ce PF
F13G11.1b External link ce SF
Gene name: CE17661  ce PF
F10C1.5 External link ce SF
Gene name: CE29753  ce PF
Y67D8A.3 External link ce SF
Gene name: CE22786  ce PF
K08B12.2a External link ce SF
Gene name: CE29814  ce PF
C32C4.5 External link ce SF
Gene name: CE31427  ce PF
K08B12.2b External link ce SF
Gene name: CE30817  ce PF
C34D1.2 External link ce SF
Gene name: CE08570  ce PF
F13G11.1a External link ce SF
Gene name: CE20684  ce PF
Y43F8C.10 External link ce SF
Gene name: CE21908  ce PF
C27C12.6 External link ce SF
Gene name: CE23560  ce PF
C34D1.1 External link ce SF
Gene name: CE08569  ce PF
C44F1.2 External link ce SF
Gene name: CE31443  ce PF
C01B12.2 External link ce SF
Gene name: CE32107  ce PF
C25G4.4 External link ce SF
Gene name: CE05305  ce PF
F53H4.5 External link ce SF
Gene name: CE11036  ce PF
R10E11.1b External link ce SF
Gene name: CE21117  ce PF
R10E11.1a External link ce SF
Gene name: CE28069  ce PF
C29F9.5 External link ce SF
Gene name: CE08453  ce PF
C29F9.6 External link ce SF
Gene name: CE08454  ce PF
K03H1.10 External link ce SF
Gene name: CE00571  ce PF
F40F12.7 External link ce SF
Gene name: CE00570  ce PF
C49F5.5 External link ce SF
Gene name: CE08856  ce PF
W10D5.3g External link ce SF
  ce PF
W10D5.3e External link ce SF
Gene name: CE34391  ce PF
W10D5.3a External link ce SF
Gene name: CE14782  ce PF
W10D5.3d External link ce SF
Gene name: CE24047  ce PF
W10D5.3c External link ce SF
Gene name: CE34390  ce PF
W10D5.3f External link ce SF
Gene name: CE34392  ce PF
T26E4.11 External link ce SF
Gene name: CE16482  ce PF
C29G2.5 External link ce SF
Gene name: CE08466  ce PF
T19A5.5 External link ce SF
Gene name: CE13734  ce PF
ZC247.3 External link ce SF
Gene name: CE15150  ce PF
W09C2.1 External link ce SF
Gene name: CE21285  ce PF
C03G6.12 External link ce SF
Gene name: CE07886  ce PF
ZK697.2 External link ce SF
Gene name: CE15397  ce PF
Y5H2B.2a External link ce SF
  ce PF
F44C8.2 External link ce SF
Gene name: CE17823  ce PF
C07A12.3b External link ce SF
  ce PF
K06B4.7 External link ce SF
Gene name: CE25931  ce PF
H12C20.6 External link ce SF
Gene name: CE31964  ce PF
T01B10.4a External link ce SF
Gene name: CE33818  ce PF
M02H5.4 External link ce SF
Gene name: CE25953  ce PF
ZK6.4 External link ce SF
Gene name: CE19643  ce PF
R04B5.3 External link ce SF
Gene name: CE06213  ce PF
K06B4.2 External link ce SF
Gene name: CE11784  ce PF
T01G6.4 External link ce SF
Gene name: CE27433  ce PF
F41B5.10 External link ce SF
Gene name: CE17819  ce PF
F44C8.6a External link ce SF
  ce PF