DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Caenorhabditis elegans Ensembl 49_180a (all transcripts)
Taxonomy: Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
Y53C12B.5a External link cl SF
Gene name: CE14902  cl PF
T22H9.4 External link cl SF
Gene name: CE33328  cl PF
Y43F8C.10 External link cl SF
Gene name: CE21908  cl PF
F13G11.1b.2 External link cl SF
  cl PF
F10C1.5 External link cl SF
Gene name: CE29753  cl PF
K08B12.2b External link cl SF
Gene name: CE30817  cl PF
Y67D8A.3 External link cl SF
Gene name: CE22786  cl PF
F13G11.1b.1 External link cl SF
  cl PF
F13G11.1a External link cl SF
Gene name: CE20684  cl PF
F13G11.1b.3 External link cl SF
  cl PF
C34D1.1 External link cl SF
Gene name: CE08569  cl PF
C32C4.5a External link cl SF
  cl PF
K08B12.2a External link cl SF
Gene name: CE29814  cl PF
C34D1.2 External link cl SF
Gene name: CE08570  cl PF
C27C12.6 External link cl SF
Gene name: CE23560  cl PF
C25G4.4 External link cl SF
Gene name: CE05305  cl PF
F53H4.5 External link cl SF
Gene name: CE11036  cl PF
C01B12.2 External link cl SF
Gene name: CE32107  cl PF
C44F1.2 External link cl SF
Gene name: CE31443  cl PF
R10E11.1b External link cl SF
Gene name: CE21117  cl PF
R10E11.1a External link cl SF
Gene name: CE28069  cl PF
C29F9.5 External link cl SF
Gene name: CE08453  cl PF
K03H1.10.1 External link cl SF
  cl PF
C29F9.6 External link cl SF
Gene name: CE08454  cl PF
K03H1.10.2 External link cl SF
  cl PF
F40F12.7.3 External link cl SF
  cl PF
F40F12.7.1 External link cl SF
  cl PF
C49F5.5 External link cl SF
Gene name: CE08856  cl PF
F40F12.7.2 External link cl SF
  cl PF
W10D5.3e External link cl SF
Gene name: CE34391  cl PF
W10D5.3d External link cl SF
Gene name: CE24047  cl PF
W10D5.3c External link cl SF
Gene name: CE34390  cl PF
W10D5.3f External link cl SF
Gene name: CE34392  cl PF
W10D5.3a External link cl SF
Gene name: CE14782  cl PF
W10D5.3g External link cl SF
  cl PF
C29G2.5 External link cl SF
Gene name: CE08466  cl PF
T26E4.11 External link cl SF
Gene name: CE16482  cl PF
T19A5.5 External link cl SF
Gene name: CE13734  cl PF
ZC247.3 External link cl SF
Gene name: CE15150  cl PF
W09C2.1b External link cl SF
  cl PF
W09C2.1a External link cl SF
  cl PF
K06B4.8 External link cl SF
Gene name: CE11796  cl PF
F25E5.6b External link cl SF
  cl PF
Y5H2A.2 External link cl SF
Gene name: CE26219  cl PF No hits
F44E7.8 External link cl SF
Gene name: CE30800  cl PF
T07C5.4 External link cl SF
Gene name: CE06382  cl PF
F44C8.6a External link cl SF
  cl PF
C45E5.6c.6 External link cl SF
  cl PF
F47C10.4 External link cl SF
Gene name: CE10662  cl PF
Y5H2B.2b External link cl SF
  cl PF