DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Caenorhabditis elegans Ensembl 49_180a (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
T22H9.4 External link cn SF
Gene name: CE33328  cn PF
Y53C12B.5a External link cn SF
Gene name: CE14902  cn PF
Y43F8C.10 External link cn SF
Gene name: CE21908  cn PF
Y67D8A.3 External link cn SF
Gene name: CE22786  cn PF
F10C1.5 External link cn SF
Gene name: CE29753  cn PF
F13G11.1a External link cn SF
Gene name: CE20684  cn PF
C34D1.1 External link cn SF
Gene name: CE08569  cn PF
C32C4.5a External link cn SF
  cn PF
K08B12.2a External link cn SF
Gene name: CE29814  cn PF
C34D1.2 External link cn SF
Gene name: CE08570  cn PF
C27C12.6 External link cn SF
Gene name: CE23560  cn PF
F53H4.5 External link cn SF
Gene name: CE11036  cn PF
C01B12.2 External link cn SF
Gene name: CE32107  cn PF
C44F1.2 External link cn SF
Gene name: CE31443  cn PF
C25G4.4 External link cn SF
Gene name: CE05305  cn PF
R10E11.1b External link cn SF
Gene name: CE21117  cn PF
C29F9.5 External link cn SF
Gene name: CE08453  cn PF
K03H1.10.1 External link cn SF
  cn PF
C29F9.6 External link cn SF
Gene name: CE08454  cn PF
F40F12.7.1 External link cn SF
  cn PF
C49F5.5 External link cn SF
Gene name: CE08856  cn PF
W10D5.3c External link cn SF
Gene name: CE34390  cn PF
C29G2.5 External link cn SF
Gene name: CE08466  cn PF
T26E4.11 External link cn SF
Gene name: CE16482  cn PF
T19A5.5 External link cn SF
Gene name: CE13734  cn PF
ZC247.3 External link cn SF
Gene name: CE15150  cn PF
W09C2.1a External link cn SF
  cn PF
T26E4.16 External link cn SF
  cn PF
K06B4.7 External link cn SF
Gene name: CE25931  cn PF
F44E7.8 External link cn SF
Gene name: CE30800  cn PF
F57A10.6 External link cn SF
  cn PF
K12H6.1 External link cn SF
Gene name: CE28062  cn PF
C17A2.8 External link cn SF
Gene name: CE08246  cn PF
C25E10.1 External link cn SF
Gene name: CE06863  cn PF
Y73F8A.21 External link cn SF
Gene name: CE22993  cn PF
T12C9.1 External link cn SF
Gene name: CE26822  cn PF
T27B7.1 External link cn SF
Gene name: CE30194  cn PF
F36A4.14 External link cn SF
Gene name: CE07187  cn PF
F44C8.8 External link cn SF
Gene name: CE10392  cn PF
F16B4.1 External link cn SF
Gene name: CE17011  cn PF
K06B4.2 External link cn SF
Gene name: CE11784  cn PF
F47C10.7 External link cn SF
Gene name: CE10666  cn PF
Y46H3D.5b External link cn SF
  cn PF
T26E4.8 External link cn SF
Gene name: CE16479  cn PF
Y45G5AM.1a.1 External link cn SF
  cn PF
Y69A2AR.26 External link cn SF
Gene name: CE26741  cn PF
R11G11.12 External link cn SF
Gene name: CE12762  cn PF
F16H9.2 External link cn SF
Gene name: CE05645  cn PF
C03G6.12 External link cn SF
Gene name: CE07886  cn PF
C17E7.7 External link cn SF
Gene name: CE17412  cn PF