DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Caenorhabditis briggsae 2
Taxonomy: Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
source (downloaded: 2005-09-08)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
CBP05898 External link cw SF
  cw PF
CBP00333 External link cw SF
  cw PF
CBP06507 External link cw SF
  cw PF
CBP07121 External link cw SF
  cw PF
CBP08214 External link cw SF
  cw PF
CBP07120 External link cw SF
  cw PF
CBP05897 External link cw SF
  cw PF
CBP16520 External link cw SF
  cw PF
CBP05113 External link cw SF
  cw PF
CBP11193 External link cw SF
  cw PF
CBP16550 External link cw SF
  cw PF
CBP16051 External link cw SF
  cw PF
CBP14570 External link cw SF
  cw PF
CBP23933 External link cw SF
  cw PF
CBP15815 External link cw SF
  cw PF
CBP08202 External link cw SF
  cw PF
CBP10257 External link cw SF
  cw PF
CBP02435 External link cw SF
  cw PF
CBP18465 External link cw SF
  cw PF
CBP02076 External link cw SF
  cw PF
CBP17520 External link cw SF
  cw PF
CBP11229 External link cw SF
  cw PF
CBP22891 External link cw SF
  cw PF
CBP14113 External link cw SF
  cw PF
CBP03023 External link cw SF
  cw PF
CBP09607 External link cw SF
  cw PF
CBP11354 External link cw SF
  cw PF
CBP09489 External link cw SF
  cw PF
CBP19640 External link cw SF
  cw PF
CBP23501 External link cw SF
  cw PF
CBP12361 External link cw SF
  cw PF
CBP01202 External link cw SF
  cw PF
CBP16644 External link cw SF
  cw PF
CBP02526 External link cw SF
  cw PF
CBP00264 External link cw SF
  cw PF
CBP15607 External link cw SF
  cw PF
CBP20508 External link cw SF
  cw PF
CBP05994 External link cw SF
  cw PF
CBP14016 External link cw SF
  cw PF
CBP07364 External link cw SF
  cw PF
CBP12341 External link cw SF
  cw PF
CBP02771 External link cw SF
  cw PF
CBP15715 External link cw SF
  cw PF
CBP07891 External link cw SF
  cw PF
CBP03824 External link cw SF
  cw PF
CBP02549 External link cw SF
  cw PF
CBP17829 External link cw SF
  cw PF
CBP04088 External link cw SF
  cw PF
CBP15136 External link cw SF
  cw PF
CBP07379 External link cw SF
  cw PF