DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Chlamydomonas reinhardtii 3.0
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas
source (downloaded: 2006-02-08)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Chlre3|168563|fgenesh2_pg.C_scaffold_2000209 External link cy SF
  cy PF No hits
jgi|Chlre3|188447|estExt_fgenesh2_pg.C_100216 External link cy SF
  cy PF No hits
jgi|Chlre3|142190|Chlre2_kg.scaffold_3000163 External link cy SF
  cy PF No hits
jgi|Chlre3|187360|estExt_fgenesh2_pg.C_60027 External link cy SF
  cy PF No hits
jgi|Chlre3|175703|fgenesh2_pg.C_scaffold_34000009 External link cy SF
  cy PF No hits
jgi|Chlre3|171659|fgenesh2_pg.C_scaffold_1000280 External link cy SF
  cy PF No hits
jgi|Chlre3|154888|Chlre2_kg.scaffold_95000011 External link cy SF
  cy PF No hits
jgi|Chlre3|127044|estExt_gwp_1H.C_60003 External link cy SF
  cy PF No hits
jgi|Chlre3|179289|fgenesh2_pg.C_scaffold_66000003 External link cy SF
  cy PF No hits
jgi|Chlre3|156694|acegs_kg.scaffold_12000046 External link cy SF
  cy PF No hits
jgi|Chlre3|142433|Chlre2_kg.scaffold_3000406 External link cy SF
  cy PF No hits
jgi|Chlre3|179291|fgenesh2_pg.C_scaffold_66000005 External link cy SF
  cy PF No hits
jgi|Chlre3|163935|fgenesh2_kg.C_scaffold_34000039 External link cy SF
  cy PF No hits
jgi|Chlre3|105335|e_gwH.31.118.1 External link cy SF
  cy PF No hits
jgi|Chlre3|109352|e_gwH.315.1.1 External link cy SF
  cy PF No hits
jgi|Chlre3|100801|e_gwH.14.147.1 External link cy SF
  cy PF No hits
jgi|Chlre3|186648|estExt_fgenesh2_pg.C_70372 External link cy SF
  cy PF No hits
jgi|Chlre3|188358|estExt_fgenesh2_pg.C_100085 External link cy SF
  cy PF No hits
jgi|Chlre3|170879|fgenesh2_pg.C_scaffold_14000329 External link cy SF
  cy PF No hits
jgi|Chlre3|107982|e_gwH.71.56.1 External link cy SF
  cy PF No hits
jgi|Chlre3|106937|e_gwH.52.20.1 External link cy SF
  cy PF No hits
jgi|Chlre3|177657|fgenesh2_pg.C_scaffold_44000001 External link cy SF
  cy PF No hits
jgi|Chlre3|105836|e_gwH.37.147.1 External link cy SF
  cy PF No hits
jgi|Chlre3|142088|Chlre2_kg.scaffold_3000061 External link cy SF
  cy PF No hits
jgi|Chlre3|148404|Chlre2_kg.scaffold_21000017 External link cy SF
  cy PF No hits
jgi|Chlre3|193596|estExt_fgenesh2_pg.C_470083 External link cy SF
  cy PF No hits
jgi|Chlre3|190235|estExt_fgenesh2_pg.C_10909 External link cy SF
  cy PF No hits
jgi|Chlre3|167010|fgenesh2_pg.C_scaffold_3000020 External link cy SF
  cy PF No hits
jgi|Chlre3|121738|e_gwW.52.19.1 External link cy SF
  cy PF No hits
jgi|Chlre3|75247|gwW.45.133.1 External link cy SF
  cy PF No hits
jgi|Chlre3|111066|e_gwH.2165.3.1 External link cy SF
  cy PF No hits
jgi|Chlre3|181252|fgenesh2_pg.C_scaffold_726000003 External link cy SF
  cy PF No hits
jgi|Chlre3|110645|e_gwH.1245.3.1 External link cy SF
  cy PF No hits
jgi|Chlre3|910|fgenesh1_pm.C_scaffold_1460000001 External link cy SF
  cy PF No hits
jgi|Chlre3|113139|e_gwW.6.99.1 External link cy SF
  cy PF No hits
jgi|Chlre3|167089|fgenesh2_pg.C_scaffold_3000099 External link cy SF
  cy PF No hits
jgi|Chlre3|126810|estExt_gwp_1H.C_30224 External link cy SF
  cy PF No hits
jgi|Chlre3|181522|fgenesh2_pg.C_scaffold_1133000001 External link cy SF
  cy PF No hits
jgi|Chlre3|110219|e_gwH.956.12.1 External link cy SF
  cy PF No hits
jgi|Chlre3|148821|Chlre2_kg.scaffold_24000220 External link cy SF
  cy PF No hits
jgi|Chlre3|191464|estExt_fgenesh2_pg.C_230178 External link cy SF
  cy PF No hits
jgi|Chlre3|177225|fgenesh2_pg.C_scaffold_40000011 External link cy SF
  cy PF No hits
jgi|Chlre3|153934|Chlre2_kg.scaffold_71000005 External link cy SF
  cy PF No hits
jgi|Chlre3|183777|estExt_fgenesh2_kg.C_10285 External link cy SF
  cy PF No hits
jgi|Chlre3|76570|estExt_GenewiseW_1.C_50164 External link cy SF
  cy PF No hits
jgi|Chlre3|110057|e_gwH.818.9.1 External link cy SF
  cy PF No hits
jgi|Chlre3|52014|gwH.1227.2.1 External link cy SF
  cy PF No hits
jgi|Chlre3|111089|e_gwH.2236.3.1 External link cy SF
  cy PF No hits
jgi|Chlre3|109773|e_gwH.653.2.1 External link cy SF
  cy PF No hits
jgi|Chlre3|111161|e_gwH.2528.2.1 External link cy SF
  cy PF No hits