DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Caenorhabditis elegans WormBase WS147 (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
source (downloaded: 2005-09-08)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
T22H9.4 External link cz SF
Gene name: CE33328  cz PF
Y53C12B.5a External link cz SF
Gene name: CE14902  cz PF
F13G11.1a External link cz SF
Gene name: CE20684  cz PF
C27C12.6 External link cz SF
Gene name: CE23560  cz PF
C34D1.2 External link cz SF
Gene name: CE08570  cz PF
Y43F8C.10 External link cz SF
Gene name: CE21908  cz PF
F10C1.5 External link cz SF
Gene name: CE29753  cz PF
Y67D8A.3 External link cz SF
Gene name: CE22786  cz PF
C34D1.1 External link cz SF
Gene name: CE08569  cz PF
C32C4.5 External link cz SF
Gene name: CE31427  cz PF
K08B12.2a External link cz SF
Gene name: CE29814  cz PF
C01B12.2 External link cz SF
Gene name: CE32107  cz PF
F53H4.5 External link cz SF
Gene name: CE11036  cz PF
C44F1.2 External link cz SF
Gene name: CE31443  cz PF
C25G4.4 External link cz SF
Gene name: CE05305  cz PF
R10E11.1b External link cz SF
Gene name: CE21117  cz PF
C29F9.5 External link cz SF
Gene name: CE08453  cz PF
K03H1.10 External link cz SF
Gene name: CE00571  cz PF
C29F9.6 External link cz SF
Gene name: CE08454  cz PF
F40F12.7 External link cz SF
Gene name: CE00570  cz PF
C49F5.5 External link cz SF
Gene name: CE08856  cz PF
W10D5.3c External link cz SF
Gene name: CE34390  cz PF
T26E4.11 External link cz SF
Gene name: CE16482  cz PF
C29G2.5 External link cz SF
Gene name: CE08466  cz PF
T19A5.5 External link cz SF
Gene name: CE13734  cz PF
ZC247.3 External link cz SF
Gene name: CE15150  cz PF
W09C2.1 External link cz SF
Gene name: CE21285  cz PF
F41D3.3 External link cz SF
Gene name: CE16022  cz PF
F47C10.7 External link cz SF
Gene name: CE10666  cz PF
R11G11.12 External link cz SF
Gene name: CE12762  cz PF
F16H9.2 External link cz SF
Gene name: CE05645  cz PF
C26B2.3a External link cz SF
Gene name: CE17474  cz PF
H12C20.3 External link cz SF
Gene name: CE18808  cz PF
F54D1.4 External link cz SF
Gene name: CE20866  cz PF
C07A12.3a External link cz SF
  cz PF
F59E11.10 External link cz SF
Gene name: CE11512  cz PF
F44C8.10 External link cz SF
Gene name: CE30795  cz PF
ZK1025.9 External link cz SF
Gene name: CE19335  cz PF
C33G8.9 External link cz SF
Gene name: CE06918  cz PF
T27B7.4 External link cz SF
Gene name: CE24018  cz PF
Y5H2A.2 External link cz SF
Gene name: CE26219  cz PF No hits
Y80D3A.4 External link cz SF
Gene name: CE24676  cz PF
M02H5.5 External link cz SF
Gene name: CE25954  cz PF
C33G8.6 External link cz SF
Gene name: CE17496  cz PF
T12C9.1 External link cz SF
Gene name: CE26822  cz PF
ZC410.1 External link cz SF
Gene name: CE26841  cz PF
F44C8.8 External link cz SF
Gene name: CE10392  cz PF
T01B10.4a External link cz SF
Gene name: CE33818  cz PF
H12C20.6 External link cz SF
Gene name: CE31964  cz PF
C06C6.5a External link cz SF
Gene name: CE15599  cz PF