DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Daphnia pulex
Taxonomy: Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
source (downloaded: 2007-07-09)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Dappu1|26189|gw1.3.653.1 External link d7 SF
  d7 PF
jgi|Dappu1|299653|JAA_SNAP_00013394 External link d7 SF
  d7 PF
jgi|Dappu1|290631|JAA_fgenesh1_pg.C_scaffold_58000063 External link d7 SF
  d7 PF
jgi|Dappu1|225264|estExt_fgenesh1_pg.C_320034 External link d7 SF
  d7 PF
jgi|Dappu1|290549|JAA_fgenesh1_pg.C_scaffold_11000159 External link d7 SF
  d7 PF
jgi|Dappu1|290632|JAA_fgenesh1_pg.C_scaffold_3000207 External link d7 SF
  d7 PF
jgi|Dappu1|237022|SNAP_00005080 External link d7 SF
  d7 PF
jgi|Dappu1|302349|PASA_GEN_1700086 External link d7 SF
  d7 PF
jgi|Dappu1|203585|estExt_Genewise1Plus.C_1450096 External link d7 SF
  d7 PF
jgi|Dappu1|64953|e_gw1.191.18.1 External link d7 SF
  d7 PF
jgi|Dappu1|63002|e_gw1.130.51.1 External link d7 SF
  d7 PF
jgi|Dappu1|9307|gw1.1620.1.1 External link d7 SF
  d7 PF
jgi|Dappu1|305689|PASA_GEN_0400334 External link d7 SF
  d7 PF
jgi|Dappu1|1432|gw1.216.2.1 External link d7 SF
  d7 PF
jgi|Dappu1|65368|e_gw1.216.3.1 External link d7 SF
  d7 PF
jgi|Dappu1|229741|estExt_fgenesh1_pg.C_2630003 External link d7 SF
  d7 PF
jgi|Dappu1|307023|PASA_GEN_5900035 External link d7 SF
  d7 PF
jgi|Dappu1|323670|NCBI_GNO_5500088 External link d7 SF
  d7 PF
jgi|Dappu1|11288|gw1.184.13.1 External link d7 SF
  d7 PF
jgi|Dappu1|24627|gw1.13.300.1 External link d7 SF
  d7 PF
jgi|Dappu1|65174|e_gw1.207.29.1 External link d7 SF
  d7 PF
jgi|Dappu1|13685|gw1.207.19.1 External link d7 SF
  d7 PF
jgi|Dappu1|28576|gw1.32.196.1 External link d7 SF
  d7 PF
jgi|Dappu1|52915|e_gw1.32.197.1 External link d7 SF
  d7 PF
jgi|Dappu1|24785|gw1.35.98.1 External link d7 SF
  d7 PF
jgi|Dappu1|305027|PASA_GEN_3200059 External link d7 SF
  d7 PF
jgi|Dappu1|324651|NCBI_GNO_6300105 External link d7 SF
  d7 PF
jgi|Dappu1|46682|e_gw1.11.311.1 External link d7 SF
  d7 PF
jgi|Dappu1|319648|NCBI_GNO_3000129 External link d7 SF
  d7 PF
jgi|Dappu1|301472|PASA_GEN_13500002 External link d7 SF
  d7 PF
jgi|Dappu1|219609|estExt_Genewise1.C_3280011 External link d7 SF
  d7 PF
jgi|Dappu1|311322|NCBI_GNO_0400094 External link d7 SF
  d7 PF
jgi|Dappu1|311954|NCBI_GNO_0500123 External link d7 SF
  d7 PF
jgi|Dappu1|220366|estExt_fgenesh1_pg.C_20119 External link d7 SF
  d7 PF
jgi|Dappu1|303110|PASA_GEN_0200195 External link d7 SF
  d7 PF
jgi|Dappu1|116667|fgenesh1_pg.C_scaffold_193000006 External link d7 SF
  d7 PF
jgi|Dappu1|299736|SPA_e_gw1.23.207.1 External link d7 SF
  d7 PF
jgi|Dappu1|304351|PASA_GEN_2800097 External link d7 SF
  d7 PF
jgi|Dappu1|299738|SPA_e_gw1.2.577.1 External link d7 SF
  d7 PF
jgi|Dappu1|305379|PASA_GEN_3900053 External link d7 SF
  d7 PF
jgi|Dappu1|323993|NCBI_GNO_5800082 External link d7 SF
  d7 PF
jgi|Dappu1|205205|estExt_Genewise1.C_10395 External link d7 SF
  d7 PF
jgi|Dappu1|106791|fgenesh1_pg.C_scaffold_45000027 External link d7 SF
  d7 PF
jgi|Dappu1|50562|e_gw1.23.21.1 External link d7 SF
  d7 PF
jgi|Dappu1|4176|gw1.3.113.1 External link d7 SF
  d7 PF
jgi|Dappu1|36213|gw1.17.463.1 External link d7 SF
  d7 PF
jgi|Dappu1|8442|gw1.83.64.1 External link d7 SF
  d7 PF
jgi|Dappu1|8468|gw1.28.112.1 External link d7 SF
  d7 PF
jgi|Dappu1|290673|FPO_gw1.43.170.1 External link d7 SF
  d7 PF
jgi|Dappu1|250334|SNAP_00018392 External link d7 SF
  d7 PF