DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Danio rerio 49_7c (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSDARP00000066779 External link da SF
  da PF
ENSDARP00000076804 External link da SF
  da PF
ENSDARP00000002460 External link da SF
  da PF
ENSDARP00000044360 External link da SF
  da PF
ENSDARP00000088405 External link da SF
  da PF
ENSDARP00000088407 External link da SF
  da PF
ENSDARP00000088406 External link da SF
  da PF
ENSDARP00000051145 External link da SF
  da PF
ENSDARP00000069959 External link da SF
  da PF
ENSDARP00000093167 External link da SF
  da PF
ENSDARP00000088404 External link da SF
  da PF
ENSDARP00000057589 External link da SF
  da PF
ENSDARP00000027279 External link da SF
  da PF
ENSDARP00000004889 External link da SF
  da PF
ENSDARP00000015394 External link da SF
  da PF
ENSDARP00000008228 External link da SF
  da PF
ENSDARP00000055589 External link da SF
  da PF
ENSDARP00000072168 External link da SF
  da PF
ENSDARP00000073773 External link da SF
  da PF
ENSDARP00000073777 External link da SF
  da PF
ENSDARP00000087646 External link da SF
  da PF
ENSDARP00000083674 External link da SF
  da PF
ENSDARP00000094543 External link da SF
  da PF
ENSDARP00000087649 External link da SF
  da PF
ENSDARP00000087657 External link da SF
  da PF
ENSDARP00000083681 External link da SF
  da PF
ENSDARP00000083682 External link da SF
  da PF
ENSDARP00000083693 External link da SF
  da PF
ENSDARP00000013376 External link da SF
  da PF
ENSDARP00000032665 External link da SF
  da PF
ENSDARP00000094451 External link da SF
  da PF
ENSDARP00000022161 External link da SF
  da PF
ENSDARP00000056569 External link da SF
  da PF
ENSDARP00000018050 External link da SF
  da PF
ENSDARP00000084499 External link da SF
  da PF
ENSDARP00000081684 External link da SF
  da PF
ENSDARP00000086306 External link da SF
  da PF
ENSDARP00000086146 External link da SF
  da PF
ENSDARP00000003264 External link da SF
  da PF
ENSDARP00000054242 External link da SF
  da PF
ENSDARP00000089922 External link da SF
  da PF
ENSDARP00000052396 External link da SF
  da PF
ENSDARP00000078049 External link da SF
  da PF
ENSDARP00000084743 External link da SF
  da PF
ENSDARP00000078046 External link da SF
  da PF
ENSDARP00000096293 External link da SF
  da PF
ENSDARP00000078039 External link da SF
  da PF
ENSDARP00000005649 External link da SF
  da PF
ENSDARP00000084745 External link da SF
  da PF
ENSDARP00000061904 External link da SF
  da PF