DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Danio rerio 49_7c (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSDARP00000066779 External link df SF
  df PF
ENSDARP00000057589 External link df SF
  df PF
ENSDARP00000051145 External link df SF
  df PF
ENSDARP00000044360 External link df SF
  df PF
ENSDARP00000002460 External link df SF
  df PF
ENSDARP00000093167 External link df SF
  df PF
ENSDARP00000027279 External link df SF
  df PF
ENSDARP00000004889 External link df SF
  df PF
ENSDARP00000015394 External link df SF
  df PF
ENSDARP00000008228 External link df SF
  df PF
ENSDARP00000055589 External link df SF
  df PF
ENSDARP00000072168 External link df SF
  df PF
ENSDARP00000073777 External link df SF
  df PF
ENSDARP00000087657 External link df SF
  df PF
ENSDARP00000083682 External link df SF
  df PF
ENSDARP00000013376 External link df SF
  df PF
ENSDARP00000032665 External link df SF
  df PF
ENSDARP00000056569 External link df SF
  df PF
ENSDARP00000018050 External link df SF
  df PF
ENSDARP00000022161 External link df SF
  df PF
ENSDARP00000086306 External link df SF
  df PF
ENSDARP00000081684 External link df SF
  df PF
ENSDARP00000084499 External link df SF
  df PF
ENSDARP00000086146 External link df SF
  df PF
ENSDARP00000054242 External link df SF
  df PF
ENSDARP00000003264 External link df SF
  df PF
ENSDARP00000089922 External link df SF
  df PF
ENSDARP00000084743 External link df SF
  df PF
ENSDARP00000005649 External link df SF
  df PF
ENSDARP00000052396 External link df SF
  df PF
ENSDARP00000061904 External link df SF
  df PF
ENSDARP00000078046 External link df SF
  df PF
ENSDARP00000070894 External link df SF
  df PF
ENSDARP00000075139 External link df SF
  df PF
ENSDARP00000029550 External link df SF
  df PF
ENSDARP00000025458 External link df SF
  df PF
ENSDARP00000087936 External link df SF
  df PF
ENSDARP00000055935 External link df SF
  df PF
ENSDARP00000068452 External link df SF
  df PF
ENSDARP00000017657 External link df SF
  df PF
ENSDARP00000006532 External link df SF
  df PF
ENSDARP00000021069 External link df SF
  df PF
ENSDARP00000054806 External link df SF
  df PF
ENSDARP00000028001 External link df SF
  df PF
ENSDARP00000057643 External link df SF
  df PF
ENSDARP00000061775 External link df SF
  df PF
ENSDARP00000002330 External link df SF
  df PF
ENSDARP00000076594 External link df SF
  df PF
ENSDARP00000090333 External link df SF
  df PF
ENSDARP00000010033 External link df SF
  df PF