DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Drosophila melanogaster FlyBase 4.2 (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
source (downloaded: 2005-09-08)

A curated set of 753 Drosophila melanogaster TFs is available at www.FlyTF.org.

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
CG12245-PA External link dn SF
Gene name: gcm  dn PF
CG3858-PB External link dn SF
  dn PF
CG11094-PA External link dn SF
Gene name: dsx  dn PF
CG15749-PA External link dn SF
  dn PF
CG15504-PA External link dn SF
Gene name: dmrt99B  dn PF
CG5737-PA External link dn SF
Gene name: dmrt93B  dn PF
CG8567-PA External link dn SF
Gene name: Deaf1  dn PF
CG10042-PB External link dn SF
Gene name: CG10042  dn PF
CG15319-PB External link dn SF
  dn PF
CG1845-PA External link dn SF
Gene name: CG1845  dn PF
CG32346-PA External link dn SF
  dn PF
CG8068-PI External link dn SF
Gene name: Su(var)2-10  dn PF
CG3647-PB External link dn SF
Gene name: stc  dn PF
CG11414-PA External link dn SF
Gene name: CG11414  dn PF
CG8376-PA External link dn SF
Gene name: ap  dn PF
CG1072-PB External link dn SF
Gene name: Awh  dn PF
CG4328-PA External link dn SF
Gene name: CG4328  dn PF
CG32105-PB External link dn SF
Gene name: CG32105  dn PF
CG10699-PB External link dn SF
Gene name: Lim3  dn PF
CG11354-PA External link dn SF
  dn PF
CG5034-PA External link dn SF
Gene name: GATAd  dn PF
CG3978-PA External link dn SF
Gene name: pnr  dn PF
CG9656-PA External link dn SF
Gene name: grn  dn PF
CG8474-PA External link dn SF
Gene name: Meics  dn PF
CG2711-PA External link dn SF
  dn PF
CG10270-PA External link dn SF
Gene name: D19B  dn PF
CG2202-PA External link dn SF
  dn PF
CG11902-PA External link dn SF
Gene name: CG11902  dn PF
CG8301-PA External link dn SF
Gene name: CG8301  dn PF
CG15436-PA External link dn SF
Gene name: CG15436  dn PF
CG2712-PA External link dn SF
  dn PF
CG6654-PA External link dn SF
Gene name: CG6654  dn PF
CG4424-PA External link dn SF
Gene name: CG4424  dn PF
CG17328-PA External link dn SF
Gene name: BG:DS02740.8  dn PF
CG7963-PA External link dn SF
Gene name: CG7963  dn PF
CG7204-PA External link dn SF
Gene name: CG7204  dn PF
CG9797-PA External link dn SF
Gene name: CG9797  dn PF
CG4936-PA External link dn SF
Gene name: CG4936  dn PF
CG11762-PA External link dn SF
Gene name: CG11762  dn PF
CG3281-PA External link dn SF
Gene name: CG3281  dn PF
CG18555-PA External link dn SF
Gene name: CG18555  dn PF
CG3941-PA External link dn SF
Gene name: CG3941  dn PF
CG10269-PA External link dn SF
Gene name: D19A  dn PF
CG17359-PA External link dn SF
Gene name: CG17359  dn PF
CG7386-PA External link dn SF
Gene name: CG7386  dn PF
CG6689-PA External link dn SF
Gene name: CG6689  dn PF
CG11695-PA External link dn SF
  dn PF
CG1792-PA External link dn SF
Gene name: CG1792  dn PF
CG4282-PA External link dn SF
Gene name: CG4282  dn PF
CG18764-PA External link dn SF
Gene name: CG18764  dn PF