DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Erinaceus europaeus 49_1c (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Insectivora; Erinaceidae; Erinaceinae; Erinaceus
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSEEUP00000012393 External link e4 SF
  e4 PF
ENSEEUP00000005088 External link e4 SF
  e4 PF
ENSEEUP00000009707 External link e4 SF
  e4 PF
ENSEEUP00000006946 External link e4 SF
  e4 PF
ENSEEUP00000009492 External link e4 SF
  e4 PF
ENSEEUP00000001545 External link e4 SF
  e4 PF
ENSEEUP00000005037 External link e4 SF
  e4 PF
ENSEEUP00000004410 External link e4 SF
  e4 PF
ENSEEUP00000001338 External link e4 SF
  e4 PF
ENSEEUP00000008809 External link e4 SF
  e4 PF
ENSEEUP00000008048 External link e4 SF
  e4 PF
ENSEEUP00000005744 External link e4 SF
  e4 PF
ENSEEUP00000008010 External link e4 SF
  e4 PF
ENSEEUP00000008630 External link e4 SF
  e4 PF
ENSEEUP00000000252 External link e4 SF
  e4 PF
ENSEEUP00000011448 External link e4 SF
  e4 PF
ENSEEUP00000005409 External link e4 SF
  e4 PF
ENSEEUP00000004835 External link e4 SF
  e4 PF
ENSEEUP00000014156 External link e4 SF
  e4 PF
ENSEEUP00000012630 External link e4 SF
  e4 PF
ENSEEUP00000002586 External link e4 SF
  e4 PF
ENSEEUP00000007070 External link e4 SF
  e4 PF
ENSEEUP00000013259 External link e4 SF
  e4 PF
ENSEEUP00000007273 External link e4 SF
  e4 PF
ENSEEUP00000014175 External link e4 SF
  e4 PF
ENSEEUP00000013591 External link e4 SF
  e4 PF
ENSEEUP00000004168 External link e4 SF
  e4 PF
ENSEEUP00000014172 External link e4 SF
  e4 PF
ENSEEUP00000007456 External link e4 SF
  e4 PF
ENSEEUP00000004173 External link e4 SF
  e4 PF
ENSEEUP00000002865 External link e4 SF
  e4 PF
ENSEEUP00000013022 External link e4 SF
  e4 PF
ENSEEUP00000011748 External link e4 SF
  e4 PF No hits
ENSEEUP00000010370 External link e4 SF
  e4 PF
ENSEEUP00000004487 External link e4 SF
  e4 PF
ENSEEUP00000000737 External link e4 SF
  e4 PF
ENSEEUP00000014437 External link e4 SF
  e4 PF
ENSEEUP00000011423 External link e4 SF
  e4 PF
ENSEEUP00000000790 External link e4 SF
  e4 PF
ENSEEUP00000004546 External link e4 SF
  e4 PF
ENSEEUP00000011142 External link e4 SF
  e4 PF
ENSEEUP00000008471 External link e4 SF
  e4 PF
ENSEEUP00000005379 External link e4 SF
  e4 PF
ENSEEUP00000005609 External link e4 SF
  e4 PF
ENSEEUP00000006090 External link e4 SF
  e4 PF
ENSEEUP00000008437 External link e4 SF
  e4 PF
ENSEEUP00000010133 External link e4 SF
  e4 PF
ENSEEUP00000004137 External link e4 SF
  e4 PF
ENSEEUP00000011758 External link e4 SF
  e4 PF
ENSEEUP00000001213 External link e4 SF
  e4 PF