DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Naegleria gruberi
Taxonomy: Eukaryota; Heterolobosea; Schizopyrenida; Vahlkampfiidae; Naegleria
source (downloaded: 2007-07-09)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Naegr1|79767|estExt_fgeneshNG_pg.C_240106 External link eb SF
  eb PF
jgi|Naegr1|51700|fgeneshHS_pg.scaffold_48000003 External link eb SF
  eb PF
jgi|Naegr1|81728|estExt_fgeneshNG_pg.C_670076 External link eb SF
  eb PF
jgi|Naegr1|67240|fgeneshNG_pg.scaffold_22000100 External link eb SF
  eb PF
jgi|Naegr1|81678|estExt_fgeneshNG_pg.C_650077 External link eb SF
  eb PF No hits
jgi|Naegr1|58686|estExt_fgeneshHS_pg.C_380107 External link eb SF
  eb PF
jgi|Naegr1|80660|estExt_fgeneshNG_pg.C_410024 External link eb SF
  eb PF
jgi|Naegr1|70226|fgeneshNG_pg.scaffold_39000039 External link eb SF
  eb PF
jgi|Naegr1|75644|fgeneshNG_pg.scaffold_83000021 External link eb SF
  eb PF
jgi|Naegr1|66071|fgeneshNG_pg.scaffold_16000223 External link eb SF
  eb PF
jgi|Naegr1|67285|fgeneshNG_pg.scaffold_22000145 External link eb SF
  eb PF
jgi|Naegr1|82117|estExt_fgeneshNG_pg.C_810030 External link eb SF
  eb PF
jgi|Naegr1|59601|estExt_fgeneshHS_pg.C_670045 External link eb SF
  eb PF No hits
jgi|Naegr1|74198|fgeneshNG_pg.scaffold_67000098 External link eb SF
  eb PF
jgi|Naegr1|65380|fgeneshNG_pg.scaffold_14000012 External link eb SF
  eb PF
jgi|Naegr1|82335|estExt_fgeneshNG_pg.C_1620004 External link eb SF
  eb PF
jgi|Naegr1|79904|estExt_fgeneshNG_pg.C_260114 External link eb SF
  eb PF
jgi|Naegr1|80905|estExt_fgeneshNG_pg.C_460053 External link eb SF
  eb PF
jgi|Naegr1|73161|fgeneshNG_pg.scaffold_58000138 External link eb SF
  eb PF
jgi|Naegr1|77873|estExt_fgeneshNG_pg.C_20054 External link eb SF
  eb PF
jgi|Naegr1|50084|fgeneshHS_pg.scaffold_32000069 External link eb SF
  eb PF
jgi|Naegr1|71642|fgeneshNG_pg.scaffold_48000029 External link eb SF
  eb PF
jgi|Naegr1|73151|fgeneshNG_pg.scaffold_58000128 External link eb SF
  eb PF
jgi|Naegr1|78813|estExt_fgeneshNG_pg.C_100162 External link eb SF
  eb PF
jgi|Naegr1|81761|estExt_fgeneshNG_pg.C_680068 External link eb SF
  eb PF
jgi|Naegr1|81777|estExt_fgeneshNG_pg.C_690008 External link eb SF
  eb PF
jgi|Naegr1|52256|fgeneshHS_pg.scaffold_54000005 External link eb SF
  eb PF
jgi|Naegr1|82238|estExt_fgeneshNG_pg.C_880009 External link eb SF
  eb PF
jgi|Naegr1|48429|fgeneshHS_pg.scaffold_19000028 External link eb SF
  eb PF
jgi|Naegr1|59091|estExt_fgeneshHS_pg.C_500006 External link eb SF
  eb PF
jgi|Naegr1|81196|estExt_fgeneshNG_pg.C_530067 External link eb SF
  eb PF
jgi|Naegr1|78877|estExt_fgeneshNG_pg.C_110132 External link eb SF
  eb PF
jgi|Naegr1|77785|estExt_fgeneshNG_pg.C_10374 External link eb SF
  eb PF
jgi|Naegr1|72798|fgeneshNG_pg.scaffold_56000036 External link eb SF
  eb PF
jgi|Naegr1|75637|fgeneshNG_pg.scaffold_83000014 External link eb SF
  eb PF
jgi|Naegr1|66648|fgeneshNG_pg.scaffold_19000112 External link eb SF
  eb PF
jgi|Naegr1|74541|fgeneshNG_pg.scaffold_71000028 External link eb SF
  eb PF
jgi|Naegr1|79756|estExt_fgeneshNG_pg.C_240081 External link eb SF
  eb PF
jgi|Naegr1|75640|fgeneshNG_pg.scaffold_83000017 External link eb SF
  eb PF
jgi|Naegr1|59338|estExt_fgeneshHS_pg.C_580006 External link eb SF
  eb PF
jgi|Naegr1|74271|fgeneshNG_pg.scaffold_68000069 External link eb SF
  eb PF
jgi|Naegr1|63195|fgeneshNG_pg.scaffold_6000039 External link eb SF
  eb PF
jgi|Naegr1|48608|fgeneshHS_pg.scaffold_20000057 External link eb SF
  eb PF
jgi|Naegr1|61403|fgeneshNG_pg.scaffold_1000337 External link eb SF
  eb PF
jgi|Naegr1|61903|fgeneshNG_pg.scaffold_2000199 External link eb SF
  eb PF
jgi|Naegr1|54561|fgeneshHS_pg.scaffold_96000004 External link eb SF
  eb PF
jgi|Naegr1|79829|estExt_fgeneshNG_pg.C_250066 External link eb SF
  eb PF
jgi|Naegr1|73662|fgeneshNG_pg.scaffold_62000089 External link eb SF
  eb PF
jgi|Naegr1|81978|estExt_fgeneshNG_pg.C_760037 External link eb SF
  eb PF
jgi|Naegr1|63966|fgeneshNG_pg.scaffold_8000203 External link eb SF
  eb PF