DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Escherichia coli K12
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia
source (downloaded: 2008-05-03)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
gi|90111708|ref|NP_418645.2| External link ec SF
  ec PF
gi|16130690|ref|NP_417263.1| External link ec SF
Gene name: chpR  ec PF
gi|16129863|ref|NP_416426.1| External link ec SF
Gene name: sdiA  ec PF
gi|16128444|ref|NP_414993.1| External link ec SF
Gene name: hha  ec PF
gi|16129583|ref|NP_416142.1| External link ec SF
  ec PF
gi|145698279|ref|NP_416406.4| External link ec SF
  ec PF
gi|16130150|ref|NP_416717.1| External link ec SF
Gene name: ada  ec PF
gi|16128771|ref|NP_415324.1| External link ec SF
Gene name: ybiI  ec PF
gi|16130771|ref|NP_417345.1| External link ec SF
Gene name: ygeV  ec PF
gi|90111234|ref|NP_415719.2| External link ec SF
  ec PF
gi|16130638|ref|NP_417211.1| External link ec SF
Gene name: fhlA  ec PF
gi|90111447|ref|NP_416986.4| External link ec SF
  ec PF
gi|16129284|ref|NP_415839.1| External link ec SF
Gene name: tyrR  ec PF
gi|16131440|ref|NP_418026.1| External link ec SF
Gene name: xylR  ec PF
gi|16130352|ref|NP_416922.1| External link ec SF
Gene name: yfeT  ec PF
gi|16129806|ref|NP_416367.1| External link ec SF
Gene name: yebK  ec PF
gi|90111460|ref|NP_417056.2| External link ec SF
  ec PF
gi|90111685|ref|NP_418513.4| External link ec SF
  ec PF
gi|16128652|ref|NP_415202.1| External link ec SF
Gene name: nagC  ec PF
gi|16128263|ref|NP_414812.1| External link ec SF
Gene name: yagL  ec PF No hits
gi|16128315|ref|NP_414864.1| External link ec SF
Gene name: prpR  ec PF
gi|90111246|ref|NP_415819.4| External link ec SF
  ec PF
gi|16131708|ref|NP_418304.1| External link ec SF
Gene name: glnG  ec PF
gi|16130157|ref|NP_416724.1| External link ec SF
Gene name: atoC  ec PF
gi|16131834|ref|NP_418432.1| External link ec SF
Gene name: hydG  ec PF
gi|16128519|ref|NP_415068.1| External link ec SF
Gene name: fimZ  ec PF
gi|16131539|ref|NP_418125.1| External link ec SF
Gene name: uhpA  ec PF
gi|16132215|ref|NP_418815.1| External link ec SF
Gene name: creB  ec PF
gi|16129184|ref|NP_415739.1| External link ec SF
Gene name: narL  ec PF
gi|16130130|ref|NP_416697.1| External link ec SF
Gene name: narP  ec PF
gi|145698268|ref|NP_416125.2| External link ec SF
  ec PF
gi|16129861|ref|NP_416424.1| External link ec SF
Gene name: uvrY  ec PF
gi|16130154|ref|NP_416721.1| External link ec SF
Gene name: rcsB  ec PF
gi|16130301|ref|NP_416870.1| External link ec SF
Gene name: evgA  ec PF
gi|16131282|ref|NP_417864.1| External link ec SF
Gene name: ompR  ec PF
gi|16131752|ref|NP_418348.1| External link ec SF
Gene name: cpxR  ec PF
gi|16130313|ref|NP_416882.1| External link ec SF
  ec PF
gi|16132218|ref|NP_418818.1| External link ec SF
Gene name: arcA  ec PF
gi|16130921|ref|NP_417497.1| External link ec SF
Gene name: ygiX  ec PF
gi|16128961|ref|NP_415515.1| External link ec SF
Gene name: torR  ec PF
gi|16128554|ref|NP_415103.1| External link ec SF
Gene name: ylcA  ec PF
gi|90111392|ref|NP_416629.4| External link ec SF
  ec PF
gi|16128384|ref|NP_414933.1| External link ec SF
Gene name: phoB  ec PF
gi|90111362|ref|NP_416478.2| External link ec SF
  ec PF
gi|16130019|ref|NP_416583.1| External link ec SF
Gene name: baeR  ec PF
gi|16128670|ref|NP_415222.1| External link ec SF
Gene name: kdpE  ec PF
gi|16131939|ref|NP_418537.1| External link ec SF
Gene name: basR  ec PF
gi|16129093|ref|NP_415648.1| External link ec SF
Gene name: phoP  ec PF
gi|16128058|ref|NP_414606.1| External link ec SF
Gene name: araC  ec PF
gi|16131745|ref|NP_418341.1| External link ec SF
Gene name: rhaS  ec PF