DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Emiliania huxleyi CCMP1516
Taxonomy: Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; Emiliania
source (downloaded: 2008-04-26)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Emihu1|470692|estExtDG_fgeneshEH_pg.C_5230006 External link ex SF
  ex PF
jgi|Emihu1|463684|estExtDG_fgeneshEH_pg.C_310094 External link ex SF
  ex PF
jgi|Emihu1|469133|estExtDG_fgeneshEH_pg.C_2510018 External link ex SF
  ex PF
jgi|Emihu1|99042|fgeneshEH_pg.17__59 External link ex SF
  ex PF
jgi|Emihu1|466286|estExtDG_fgeneshEH_pg.C_970054 External link ex SF
  ex PF
jgi|Emihu1|211503|gm1.4800108 External link ex SF
  ex PF
jgi|Emihu1|217386|gm1.7300186 External link ex SF
  ex PF
jgi|Emihu1|450965|estExtDG_Genemark1.C_350225 External link ex SF
  ex PF
jgi|Emihu1|443630|estExtDG_fgenesh_newKGs_kg.C_2540017 External link ex SF
  ex PF
jgi|Emihu1|224905|gm1.12000077 External link ex SF
  ex PF
jgi|Emihu1|253934|gm1.197900001 External link ex SF
  ex PF
jgi|Emihu1|108598|fgeneshEH_pg.105__85 External link ex SF
  ex PF
jgi|Emihu1|437467|estExtDG_fgenesh_newKGs_kg.C_600026 External link ex SF
  ex PF No hits
jgi|Emihu1|459917|estExtDG_Genemark1.C_7000008 External link ex SF
  ex PF
jgi|Emihu1|465304|estExtDG_fgeneshEH_pg.C_680009 External link ex SF
  ex PF No hits
jgi|Emihu1|206968|gm1.2800120 External link ex SF
  ex PF
jgi|Emihu1|468676|estExtDG_fgeneshEH_pg.C_2070006 External link ex SF
  ex PF
jgi|Emihu1|452332|estExtDG_Genemark1.C_600167 External link ex SF
  ex PF
jgi|Emihu1|469290|estExtDG_fgeneshEH_pg.C_2690002 External link ex SF
  ex PF No hits
jgi|Emihu1|221829|gm1.9900038 External link ex SF
  ex PF
jgi|Emihu1|445885|estExtDG_fgenesh_newKGs_kg.C_5470004 External link ex SF
  ex PF No hits
jgi|Emihu1|230389|gm1.16300069 External link ex SF
  ex PF
jgi|Emihu1|454368|estExtDG_Genemark1.C_1080135 External link ex SF
  ex PF
jgi|Emihu1|99778|fgeneshEH_pg.20__154 External link ex SF
  ex PF No hits
jgi|Emihu1|224341|gm1.11700064 External link ex SF
  ex PF
jgi|Emihu1|440313|estExtDG_fgenesh_newKGs_kg.C_1230032 External link ex SF
  ex PF No hits
jgi|Emihu1|465205|estExtDG_fgeneshEH_pg.C_650057 External link ex SF
  ex PF
jgi|Emihu1|462527|estExtDG_fgeneshEH_pg.C_150055 External link ex SF
  ex PF No hits
jgi|Emihu1|457502|estExtDG_Genemark1.C_2510008 External link ex SF
  ex PF
jgi|Emihu1|448079|estExtDG_Genemark1.C_40928 External link ex SF
  ex PF No hits
jgi|Emihu1|249373|gm1.77100004 External link ex SF
  ex PF
jgi|Emihu1|452754|estExtDG_Genemark1.C_680030 External link ex SF
  ex PF
jgi|Emihu1|46659|gw1.43.48.1 External link ex SF
  ex PF
jgi|Emihu1|63629|e_gw1.18.73.1 External link ex SF
  ex PF
jgi|Emihu1|369457|fgenesh_newKGs_kg.370__2__2696826:1 External link ex SF
  ex PF
jgi|Emihu1|436051|estExtDG_fgenesh_newKGs_kg.C_370023 External link ex SF
  ex PF
jgi|Emihu1|217700|gm1.7500063 External link ex SF
  ex PF No hits
jgi|Emihu1|96501|fgeneshEH_pg.5__293 External link ex SF
  ex PF
jgi|Emihu1|107505|fgeneshEH_pg.92__19 External link ex SF
  ex PF
jgi|Emihu1|453722|estExtDG_Genemark1.C_910012 External link ex SF
  ex PF
jgi|Emihu1|122070|fgeneshEH_pg.1109__1 External link ex SF
  ex PF
jgi|Emihu1|117680|fgeneshEH_pg.355__4 External link ex SF
  ex PF
jgi|Emihu1|251256|gm1.106500006 External link ex SF
  ex PF No hits
jgi|Emihu1|470986|estExtDG_fgeneshEH_pg.C_6690003 External link ex SF
  ex PF
jgi|Emihu1|443939|estExtDG_fgenesh_newKGs_kg.C_2800009 External link ex SF
  ex PF
jgi|Emihu1|462154|estExtDG_fgeneshEH_pg.C_110084 External link ex SF
  ex PF
jgi|Emihu1|224576|gm1.11800111 External link ex SF
  ex PF
jgi|Emihu1|465027|estExtDG_fgeneshEH_pg.C_610062 External link ex SF
  ex PF
jgi|Emihu1|436317|estExtDG_fgenesh_newKGs_kg.C_400112 External link ex SF
  ex PF
jgi|Emihu1|470076|estExtDG_fgeneshEH_pg.C_3700008 External link ex SF
  ex PF