DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Phanerochaete chrysosporium 2.1
Taxonomy: Eukaryota; Fungi; Basidiomycota; Hymenomycetes; Homobasidiomycetes; Aphyllophorales; Corticiaceae; Phanerochaete
source (downloaded: 2005-09-08)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Phchr1|130363|e_gwh2.25.53.1 External link fc SF
  fc PF No hits
jgi|Phchr1|136848|e_gww2.7.722.1 External link fc SF
  fc PF
jgi|Phchr1|131179|e_gww2.5.562.1 External link fc SF
  fc PF
jgi|Phchr1|6653|fgenesh1_pg.C_scaffold_11000338 External link fc SF
  fc PF
jgi|Phchr1|2873|fgenesh1_pg.C_scaffold_4000132 External link fc SF
  fc PF
jgi|Phchr1|1241|fgenesh1_pg.C_scaffold_2000219 External link fc SF
  fc PF
jgi|Phchr1|2079|fgenesh1_pg.C_scaffold_3000073 External link fc SF
  fc PF
jgi|Phchr1|2527|fgenesh1_pg.C_scaffold_3000521 External link fc SF
  fc PF
jgi|Phchr1|2011|fgenesh1_pg.C_scaffold_3000005 External link fc SF
  fc PF
jgi|Phchr1|43861|gww2.9.448.1 External link fc SF
  fc PF
jgi|Phchr1|1029|fgenesh1_pg.C_scaffold_2000007 External link fc SF
  fc PF
jgi|Phchr1|569|fgenesh1_pg.C_scaffold_1000569 External link fc SF
  fc PF
jgi|Phchr1|9468|fgenesh1_pg.C_scaffold_27000005 External link fc SF
  fc PF
jgi|Phchr1|1351|fgenesh1_pg.C_scaffold_2000329 External link fc SF
  fc PF
jgi|Phchr1|27311|gwh2.1.333.1 External link fc SF
  fc PF
jgi|Phchr1|8997|fgenesh1_pg.C_scaffold_20000087 External link fc SF
  fc PF
jgi|Phchr1|8254|fgenesh1_pg.C_scaffold_16000036 External link fc SF
  fc PF
jgi|Phchr1|2755|fgenesh1_pg.C_scaffold_4000014 External link fc SF
  fc PF
jgi|Phchr1|3986|fgenesh1_pg.C_scaffold_5000548 External link fc SF
  fc PF
jgi|Phchr1|5274|fgenesh1_pg.C_scaffold_8000449 External link fc SF
  fc PF
jgi|Phchr1|3775|fgenesh1_pg.C_scaffold_5000337 External link fc SF
  fc PF
jgi|Phchr1|2222|fgenesh1_pg.C_scaffold_3000216 External link fc SF
  fc PF
jgi|Phchr1|3392|fgenesh1_pg.C_scaffold_4000651 External link fc SF
  fc PF
jgi|Phchr1|5351|fgenesh1_pg.C_scaffold_8000526 External link fc SF
  fc PF
jgi|Phchr1|2758|fgenesh1_pg.C_scaffold_4000017 External link fc SF
  fc PF
jgi|Phchr1|5016|fgenesh1_pg.C_scaffold_8000191 External link fc SF
  fc PF
jgi|Phchr1|8756|fgenesh1_pg.C_scaffold_18000127 External link fc SF
  fc PF
jgi|Phchr1|3363|fgenesh1_pg.C_scaffold_4000622 External link fc SF
  fc PF No hits
jgi|Phchr1|5135|fgenesh1_pg.C_scaffold_8000310 External link fc SF
  fc PF
jgi|Phchr1|3510|fgenesh1_pg.C_scaffold_5000072 External link fc SF
  fc PF
jgi|Phchr1|2275|fgenesh1_pg.C_scaffold_3000269 External link fc SF
  fc PF
jgi|Phchr1|9761|fgenesh1_pg.C_scaffold_135000001 External link fc SF
  fc PF No hits
jgi|Phchr1|6248|fgenesh1_pg.C_scaffold_10000331 External link fc SF
  fc PF
jgi|Phchr1|689|fgenesh1_pg.C_scaffold_1000689 External link fc SF
  fc PF
jgi|Phchr1|4980|fgenesh1_pg.C_scaffold_8000155 External link fc SF
  fc PF
jgi|Phchr1|30269|gwh2.4.337.1 External link fc SF
  fc PF
jgi|Phchr1|303|fgenesh1_pg.C_scaffold_1000303 External link fc SF
  fc PF No hits
jgi|Phchr1|144|fgenesh1_pg.C_scaffold_1000144 External link fc SF
  fc PF
jgi|Phchr1|2765|fgenesh1_pg.C_scaffold_4000024 External link fc SF
  fc PF
jgi|Phchr1|524|fgenesh1_pg.C_scaffold_1000524 External link fc SF
  fc PF
jgi|Phchr1|2915|fgenesh1_pg.C_scaffold_4000174 External link fc SF
  fc PF
jgi|Phchr1|5548|fgenesh1_pg.C_scaffold_9000152 External link fc SF
  fc PF
jgi|Phchr1|6444|fgenesh1_pg.C_scaffold_11000129 External link fc SF
  fc PF No hits
jgi|Phchr1|5325|fgenesh1_pg.C_scaffold_8000500 External link fc SF
  fc PF
jgi|Phchr1|4965|fgenesh1_pg.C_scaffold_8000140 External link fc SF
  fc PF
jgi|Phchr1|5134|fgenesh1_pg.C_scaffold_8000309 External link fc SF
  fc PF
jgi|Phchr1|2373|fgenesh1_pg.C_scaffold_3000367 External link fc SF
  fc PF
jgi|Phchr1|2218|fgenesh1_pg.C_scaffold_3000212 External link fc SF
  fc PF
jgi|Phchr1|2326|fgenesh1_pg.C_scaffold_3000320 External link fc SF
  fc PF
jgi|Phchr1|6033|fgenesh1_pg.C_scaffold_10000116 External link fc SF
  fc PF