DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Plasmodium knowlesi
Taxonomy: Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Plasmodium)
source (downloaded: 2007-07-20)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


Details Genome DB Domain architecture
PKH_130820 External link fw SF
  fw PF
PKH_080880 External link fw SF
  fw PF
PKH_134080 External link fw SF
  fw PF
PKH_101200 External link fw SF
  fw PF No hits
PKH_020390 External link fw SF
  fw PF
PKH_092610 External link fw SF
  fw PF
PKH_094340 External link fw SF
  fw PF No hits
PKH_061800 External link fw SF
  fw PF
PKH_080420 External link fw SF
  fw PF
PKH_111010 External link fw SF No hits
  fw PF
PKH_090100 External link fw SF No hits
  fw PF
PKH_081660 External link fw SF No hits
  fw PF
PKH_124160 External link fw SF No hits
  fw PF
PKH_051330 External link fw SF No hits
  fw PF