DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Gasterosteus aculeatus 49_1f (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei; Acanthomorpha; Acanthopterygii; Percomorpha; Gasterosteiformes; Gasterosteidae; Gasterosteus
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSGACP00000001498 External link g1 SF
  g1 PF
ENSGACP00000009024 External link g1 SF
  g1 PF
ENSGACP00000019148 External link g1 SF
  g1 PF
ENSGACP00000025750 External link g1 SF
  g1 PF
ENSGACP00000019139 External link g1 SF
  g1 PF
ENSGACP00000019142 External link g1 SF
  g1 PF
ENSGACP00000014740 External link g1 SF
  g1 PF
ENSGACP00000012338 External link g1 SF
  g1 PF
ENSGACP00000022065 External link g1 SF
  g1 PF
ENSGACP00000021851 External link g1 SF
  g1 PF
ENSGACP00000024394 External link g1 SF
  g1 PF
ENSGACP00000011071 External link g1 SF
  g1 PF
ENSGACP00000011057 External link g1 SF
  g1 PF No hits
ENSGACP00000011811 External link g1 SF
  g1 PF
ENSGACP00000010331 External link g1 SF
  g1 PF
ENSGACP00000004744 External link g1 SF
  g1 PF
ENSGACP00000008033 External link g1 SF
  g1 PF
ENSGACP00000001484 External link g1 SF
  g1 PF
ENSGACP00000012154 External link g1 SF
  g1 PF
ENSGACP00000000643 External link g1 SF
  g1 PF
ENSGACP00000013318 External link g1 SF
  g1 PF
ENSGACP00000024794 External link g1 SF
  g1 PF
ENSGACP00000010236 External link g1 SF
  g1 PF
ENSGACP00000014994 External link g1 SF
  g1 PF
ENSGACP00000006405 External link g1 SF
  g1 PF
ENSGACP00000009172 External link g1 SF
  g1 PF
ENSGACP00000024469 External link g1 SF
  g1 PF
ENSGACP00000007778 External link g1 SF
  g1 PF
ENSGACP00000017218 External link g1 SF
  g1 PF
ENSGACP00000023303 External link g1 SF
  g1 PF
ENSGACP00000026973 External link g1 SF
  g1 PF
ENSGACP00000016761 External link g1 SF
  g1 PF
ENSGACP00000006031 External link g1 SF
  g1 PF
ENSGACP00000006839 External link g1 SF
  g1 PF
ENSGACP00000022315 External link g1 SF
  g1 PF
ENSGACP00000014357 External link g1 SF
  g1 PF
ENSGACP00000015920 External link g1 SF
  g1 PF
ENSGACP00000024230 External link g1 SF
  g1 PF
ENSGACP00000015894 External link g1 SF
  g1 PF
ENSGACP00000010472 External link g1 SF
  g1 PF
ENSGACP00000017986 External link g1 SF
  g1 PF
ENSGACP00000026830 External link g1 SF
  g1 PF
ENSGACP00000022915 External link g1 SF
  g1 PF
ENSGACP00000015447 External link g1 SF
  g1 PF
ENSGACP00000021907 External link g1 SF
  g1 PF
ENSGACP00000004625 External link g1 SF
  g1 PF
ENSGACP00000018381 External link g1 SF
  g1 PF
ENSGACP00000019748 External link g1 SF
  g1 PF
ENSGACP00000013406 External link g1 SF
  g1 PF
ENSGACP00000012676 External link g1 SF
  g1 PF