DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Cavia porcellus 49_1c (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricognathi; Caviidae; Cavia
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSCPOP00000011212 External link g2 SF
  g2 PF No hits
ENSCPOP00000006181 External link g2 SF
  g2 PF
ENSCPOP00000010118 External link g2 SF
  g2 PF
ENSCPOP00000001633 External link g2 SF
  g2 PF
ENSCPOP00000005330 External link g2 SF
  g2 PF
ENSCPOP00000001401 External link g2 SF
  g2 PF
ENSCPOP00000005481 External link g2 SF
  g2 PF
ENSCPOP00000012064 External link g2 SF
  g2 PF
ENSCPOP00000001840 External link g2 SF
  g2 PF
ENSCPOP00000004894 External link g2 SF
  g2 PF
ENSCPOP00000004489 External link g2 SF
  g2 PF
ENSCPOP00000003843 External link g2 SF
  g2 PF
ENSCPOP00000003135 External link g2 SF
  g2 PF
ENSCPOP00000002776 External link g2 SF
  g2 PF
ENSCPOP00000002516 External link g2 SF
  g2 PF
ENSCPOP00000002149 External link g2 SF
  g2 PF
ENSCPOP00000011239 External link g2 SF
  g2 PF
ENSCPOP00000005465 External link g2 SF
  g2 PF
ENSCPOP00000006830 External link g2 SF
  g2 PF
ENSCPOP00000002802 External link g2 SF
  g2 PF
ENSCPOP00000009529 External link g2 SF
  g2 PF
ENSCPOP00000002579 External link g2 SF
  g2 PF
ENSCPOP00000013828 External link g2 SF
  g2 PF
ENSCPOP00000004124 External link g2 SF
  g2 PF
ENSCPOP00000005389 External link g2 SF
  g2 PF
ENSCPOP00000013354 External link g2 SF
  g2 PF
ENSCPOP00000005308 External link g2 SF
  g2 PF
ENSCPOP00000009446 External link g2 SF
  g2 PF
ENSCPOP00000008063 External link g2 SF
  g2 PF
ENSCPOP00000007396 External link g2 SF
  g2 PF
ENSCPOP00000007636 External link g2 SF
  g2 PF
ENSCPOP00000013895 External link g2 SF
  g2 PF
ENSCPOP00000008474 External link g2 SF
  g2 PF
ENSCPOP00000006140 External link g2 SF
  g2 PF
ENSCPOP00000005439 External link g2 SF
  g2 PF
ENSCPOP00000007877 External link g2 SF
  g2 PF
ENSCPOP00000013893 External link g2 SF
  g2 PF
ENSCPOP00000001339 External link g2 SF
  g2 PF
ENSCPOP00000001849 External link g2 SF
  g2 PF
ENSCPOP00000001965 External link g2 SF
  g2 PF
ENSCPOP00000012029 External link g2 SF
  g2 PF
ENSCPOP00000007444 External link g2 SF
  g2 PF
ENSCPOP00000013644 External link g2 SF
  g2 PF
ENSCPOP00000006775 External link g2 SF
  g2 PF
ENSCPOP00000002076 External link g2 SF
  g2 PF
ENSCPOP00000005215 External link g2 SF
  g2 PF
ENSCPOP00000009030 External link g2 SF
  g2 PF
ENSCPOP00000007724 External link g2 SF
  g2 PF
ENSCPOP00000008799 External link g2 SF
  g2 PF
ENSCPOP00000007573 External link g2 SF
  g2 PF