DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Spermophilus tridecemlineatus 49_1e (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Sciuridae; Xerinae; Marmotini; Spermophilus
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSSTOP00000008574 External link gb SF
  gb PF
ENSSTOP00000013224 External link gb SF
  gb PF No hits
ENSSTOP00000003121 External link gb SF
  gb PF
ENSSTOP00000006390 External link gb SF
  gb PF No hits
ENSSTOP00000006427 External link gb SF
  gb PF
ENSSTOP00000009178 External link gb SF
  gb PF
ENSSTOP00000014774 External link gb SF
  gb PF
ENSSTOP00000005349 External link gb SF
  gb PF
ENSSTOP00000005736 External link gb SF
  gb PF
ENSSTOP00000004707 External link gb SF
  gb PF
ENSSTOP00000004739 External link gb SF
  gb PF
ENSSTOP00000003738 External link gb SF
  gb PF
ENSSTOP00000000077 External link gb SF
  gb PF
ENSSTOP00000014682 External link gb SF
  gb PF
ENSSTOP00000008955 External link gb SF
  gb PF
ENSSTOP00000013742 External link gb SF
  gb PF
ENSSTOP00000004511 External link gb SF
  gb PF
ENSSTOP00000000650 External link gb SF
  gb PF
ENSSTOP00000003355 External link gb SF
  gb PF
ENSSTOP00000001099 External link gb SF
  gb PF
ENSSTOP00000006271 External link gb SF
  gb PF
ENSSTOP00000002400 External link gb SF
  gb PF
ENSSTOP00000004483 External link gb SF
  gb PF
ENSSTOP00000014107 External link gb SF
  gb PF
ENSSTOP00000000712 External link gb SF
  gb PF
ENSSTOP00000000959 External link gb SF
  gb PF
ENSSTOP00000013139 External link gb SF
  gb PF
ENSSTOP00000011453 External link gb SF
  gb PF
ENSSTOP00000004713 External link gb SF
  gb PF
ENSSTOP00000002187 External link gb SF
  gb PF
ENSSTOP00000010529 External link gb SF
  gb PF
ENSSTOP00000003417 External link gb SF
  gb PF
ENSSTOP00000006419 External link gb SF
  gb PF
ENSSTOP00000000357 External link gb SF
  gb PF
ENSSTOP00000007150 External link gb SF
  gb PF
ENSSTOP00000014793 External link gb SF
  gb PF
ENSSTOP00000009036 External link gb SF
  gb PF
ENSSTOP00000013534 External link gb SF
  gb PF
ENSSTOP00000002649 External link gb SF
  gb PF
ENSSTOP00000011889 External link gb SF
  gb PF
ENSSTOP00000011114 External link gb SF
  gb PF
ENSSTOP00000008511 External link gb SF
  gb PF
ENSSTOP00000004874 External link gb SF
  gb PF
ENSSTOP00000004700 External link gb SF
  gb PF
ENSSTOP00000013428 External link gb SF
  gb PF
ENSSTOP00000009829 External link gb SF
  gb PF
ENSSTOP00000004661 External link gb SF
  gb PF
ENSSTOP00000010832 External link gb SF
  gb PF
ENSSTOP00000005338 External link gb SF
  gb PF
ENSSTOP00000004652 External link gb SF
  gb PF