DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Giardia lamblia
Taxonomy: Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia
source (downloaded: 2007-09-28)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


Details Genome DB Domain architecture
2732 gf SF
  gf PF
23756 gf SF
  gf PF
6626 gf SF
  gf PF
11383 gf SF
  gf PF No hits
7234 gf SF
  gf PF No hits
7272 gf SF
  gf PF No hits
113625 gf SF
  gf PF No hits
33232 gf SF
  gf PF No hits
8055 gf SF
  gf PF No hits
227576 gf SF
  gf PF No hits
3786 gf SF
  gf PF No hits
32686 gf SF
  gf PF No hits
9154 gf SF
  gf PF No hits
16640 gf SF
  gf PF
29140 gf SF
  gf PF No hits
88945 gf SF
  gf PF No hits
16406 gf SF
  gf PF
94525 gf SF No hits
  gf PF
17003 gf SF No hits
  gf PF
8920 gf SF No hits
  gf PF
10261 gf SF No hits
  gf PF
9237 gf SF No hits
  gf PF
13007 gf SF No hits
  gf PF
11930 gf SF No hits
  gf PF