DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Gallus gallus 49_2g (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSGALP00000026273 External link gg SF
  gg PF
ENSGALP00000020805 External link gg SF
  gg PF
ENSGALP00000036461 External link gg SF
  gg PF
ENSGALP00000034046 External link gg SF
  gg PF No hits
ENSGALP00000037648 External link gg SF
  gg PF No hits
ENSGALP00000016504 External link gg SF
  gg PF
ENSGALP00000037643 External link gg SF
  gg PF No hits
ENSGALP00000016503 External link gg SF
  gg PF No hits
ENSGALP00000016502 External link gg SF
  gg PF
ENSGALP00000017420 External link gg SF
  gg PF
ENSGALP00000037645 External link gg SF
  gg PF No hits
ENSGALP00000024778 External link gg SF
  gg PF
ENSGALP00000035907 External link gg SF
  gg PF
ENSGALP00000008574 External link gg SF
  gg PF
ENSGALP00000037417 External link gg SF
  gg PF
ENSGALP00000017422 External link gg SF
  gg PF
ENSGALP00000001447 External link gg SF
  gg PF
ENSGALP00000027995 External link gg SF
  gg PF
ENSGALP00000008146 External link gg SF
  gg PF
ENSGALP00000001451 External link gg SF
  gg PF
ENSGALP00000022655 External link gg SF
  gg PF
ENSGALP00000002052 External link gg SF
  gg PF
ENSGALP00000002312 External link gg SF
  gg PF
ENSGALP00000000930 External link gg SF
  gg PF
ENSGALP00000012573 External link gg SF
  gg PF
ENSGALP00000019537 External link gg SF
  gg PF
ENSGALP00000038776 External link gg SF
  gg PF
ENSGALP00000005734 External link gg SF
  gg PF
ENSGALP00000005731 External link gg SF
  gg PF
ENSGALP00000015214 External link gg SF
  gg PF
ENSGALP00000015213 External link gg SF
  gg PF
ENSGALP00000020365 External link gg SF
  gg PF
ENSGALP00000037791 External link gg SF
  gg PF
ENSGALP00000037789 External link gg SF
  gg PF
ENSGALP00000038834 External link gg SF
  gg PF
ENSGALP00000033036 External link gg SF
  gg PF
ENSGALP00000040470 External link gg SF
  gg PF
ENSGALP00000012927 External link gg SF
  gg PF
ENSGALP00000002836 External link gg SF
  gg PF
ENSGALP00000002848 External link gg SF
  gg PF
ENSGALP00000006249 External link gg SF
  gg PF
ENSGALP00000002660 External link gg SF
  gg PF
ENSGALP00000018523 External link gg SF
  gg PF
ENSGALP00000035074 External link gg SF
  gg PF
ENSGALP00000033456 External link gg SF
  gg PF
ENSGALP00000003475 External link gg SF
  gg PF
ENSGALP00000013502 External link gg SF
  gg PF
ENSGALP00000008672 External link gg SF
  gg PF
ENSGALP00000024112 External link gg SF
  gg PF
ENSGALP00000030109 External link gg SF
  gg PF