DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Selaginella moellendorffii
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; Selaginella
source (downloaded: 2008-01-07)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Selmo1|411158|fgenesh2_pg.C_scaffold_14000211 External link gj SF
  gj PF
jgi|Selmo1|93518|e_gw1.14.413.1 External link gj SF
  gj PF
jgi|Selmo1|180368|estExt_Genewise1Plus.C_590092 External link gj SF
  gj PF
jgi|Selmo1|9031|gw1.4.172.1 External link gj SF
  gj PF
jgi|Selmo1|438630|estExt_fgenesh2_pg.C_30602 External link gj SF
  gj PF
jgi|Selmo1|438933|estExt_fgenesh2_pg.C_40631 External link gj SF
  gj PF
jgi|Selmo1|30433|gw1.11.461.1 External link gj SF
  gj PF
jgi|Selmo1|69566|gw1.0.1826.1 External link gj SF
  gj PF
jgi|Selmo1|29495|gw1.13.397.1 External link gj SF
  gj PF
jgi|Selmo1|177195|estExt_Genewise1Plus.C_380364 External link gj SF
  gj PF
jgi|Selmo1|440037|estExt_fgenesh2_pg.C_90061 External link gj SF
  gj PF
jgi|Selmo1|29498|gw1.1.704.1 External link gj SF
  gj PF
jgi|Selmo1|405209|fgenesh2_pg.C_scaffold_3000432 External link gj SF
  gj PF
jgi|Selmo1|69510|gw1.7.1367.1 External link gj SF
  gj PF
jgi|Selmo1|409922|fgenesh2_pg.C_scaffold_11000305 External link gj SF
  gj PF
jgi|Selmo1|84151|e_gw1.6.73.1 External link gj SF
  gj PF
jgi|Selmo1|438136|estExt_fgenesh2_pg.C_20109 External link gj SF
  gj PF
jgi|Selmo1|110681|e_gw1.40.532.1 External link gj SF
  gj PF
jgi|Selmo1|80646|e_gw1.3.137.1 External link gj SF
  gj PF
jgi|Selmo1|404286|fgenesh2_pg.C_scaffold_2000274 External link gj SF
  gj PF
jgi|Selmo1|35059|gw1.7.651.1 External link gj SF
  gj PF
jgi|Selmo1|233860|fgenesh1_pm.C_scaffold_51000052 External link gj SF
  gj PF
jgi|Selmo1|425147|fgenesh2_pg.C_scaffold_72000045 External link gj SF
  gj PF
jgi|Selmo1|34350|gw1.40.292.1 External link gj SF
  gj PF
jgi|Selmo1|58353|gw1.30.483.1 External link gj SF
  gj PF
jgi|Selmo1|440762|estExt_fgenesh2_pg.C_120159 External link gj SF
  gj PF
jgi|Selmo1|429480|fgenesh2_pg.C_scaffold_115000014 External link gj SF
  gj PF
jgi|Selmo1|81439|e_gw1.4.1065.1 External link gj SF
  gj PF
jgi|Selmo1|405855|fgenesh2_pg.C_scaffold_4000429 External link gj SF
  gj PF
jgi|Selmo1|402076|fgenesh2_pg.C_scaffold_0000081 External link gj SF
  gj PF
jgi|Selmo1|412738|fgenesh2_pg.C_scaffold_18000314 External link gj SF
  gj PF
jgi|Selmo1|405045|fgenesh2_pg.C_scaffold_3000268 External link gj SF
  gj PF
jgi|Selmo1|411161|fgenesh2_pg.C_scaffold_14000214 External link gj SF
  gj PF
jgi|Selmo1|84658|e_gw1.6.1071.1 External link gj SF
  gj PF
jgi|Selmo1|5961|gw1.15.43.1 External link gj SF
  gj PF
jgi|Selmo1|235487|fgenesh1_pm.C_scaffold_87000023 External link gj SF
  gj PF
jgi|Selmo1|91791|e_gw1.12.114.1 External link gj SF
  gj PF
jgi|Selmo1|9597|gw1.69.51.1 External link gj SF
  gj PF
jgi|Selmo1|9595|gw1.50.35.1 External link gj SF
  gj PF
jgi|Selmo1|101522|e_gw1.24.78.1 External link gj SF
  gj PF
jgi|Selmo1|93174|e_gw1.14.399.1 External link gj SF
  gj PF
jgi|Selmo1|121275|e_gw1.64.17.1 External link gj SF
  gj PF
jgi|Selmo1|437868|estExt_fgenesh2_pg.C_10322 External link gj SF
  gj PF
jgi|Selmo1|4727|gw1.35.54.1 External link gj SF
  gj PF
jgi|Selmo1|5960|gw1.115.11.1 External link gj SF
  gj PF
jgi|Selmo1|411193|fgenesh2_pg.C_scaffold_14000246 External link gj SF
  gj PF
jgi|Selmo1|113962|e_gw1.47.54.1 External link gj SF
  gj PF
jgi|Selmo1|79393|e_gw1.3.1635.1 External link gj SF
  gj PF
jgi|Selmo1|85851|e_gw1.7.1443.1 External link gj SF
  gj PF
jgi|Selmo1|9596|gw1.9.135.1 External link gj SF
  gj PF