DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Chlorella sp. NC64A
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
source (downloaded: 2008-06-16)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|ChlNC64A_1|56599|estExt_fgenesh3_pg.C_10352 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|143570|IGS.gm_6_00144 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|52345|fgenesh3_pg.C_scaffold_10000130 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|139722|IGS.gm_26_00075 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|137653|IGS.gm_2_00120 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|138076|IGS.gm_2_00543 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|143118|IGS.gm_5_00447 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|135624|IGS.gm_14_00157 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|140071|IGS.gm_28_00102 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|140027|IGS.gm_28_00058 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|137100|IGS.gm_18_00206 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|142969|IGS.gm_5_00298 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|140023|IGS.gm_28_00054 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|135082|IGS.gm_13_00010 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|136485|IGS.gm_16_00208 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|134820|IGS.gm_12_00206 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|145396|IGS.gm_9_00203 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|58003|estExt_fgenesh3_pg.C_110219 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|28000|e_gw1.29.98.1 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|143607|IGS.gm_6_00181 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|57326|estExt_fgenesh3_pg.C_50293 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|13529|gw1.3.461.1 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|138273|IGS.gm_20_00022 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|143243|IGS.gm_5_00572 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|141224|IGS.gm_32_00062 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|137655|IGS.gm_2_00122 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|54503|fgenesh3_pg.C_scaffold_22000121 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|59189|estExt_fgenesh3_pg.C_280049 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|139265|IGS.gm_24_00045 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|143280|IGS.gm_5_00609 External link h2 SF
  h2 PF No hits
jgi|ChlNC64A_1|142291|IGS.gm_4_00432 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|142555|IGS.gm_42_00024 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|23683|e_gw1.11.245.1 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|55033|fgenesh3_pg.C_scaffold_28000063 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|139929|IGS.gm_27_00107 External link h2 SF
  h2 PF No hits
jgi|ChlNC64A_1|143031|IGS.gm_5_00360 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|17998|gw1.7.372.1 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|138311|IGS.gm_20_00060 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|136835|IGS.gm_17_00239 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|30989|estExt_Genewise1.C_90203 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|134832|IGS.gm_12_00218 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|138597|IGS.gm_21_00076 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|14125|gw1.3.500.1 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|136191|IGS.gm_15_00287 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|145510|IGS.gm_9_00317 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|53340|fgenesh3_pg.C_scaffold_15000025 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|49863|fgenesh3_pg.C_scaffold_2000108 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|139893|IGS.gm_27_00071 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|144757|IGS.gm_8_00085 External link h2 SF
  h2 PF
jgi|ChlNC64A_1|28362|e_gw1.34.38.1 External link h2 SF
  h2 PF