DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Phycomyces blakesleeanus
Taxonomy: Eukaryota; Fungi; Fungi incertae sedis; Basal fungal lineages; Mucoromycotina; Mucorales; Mucoraceae; Phycomyces
source (downloaded: 2007-07-09)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Phybl1|63360|fgeneshPB_pg.7__60 External link hn SF
  hn PF
jgi|Phybl1|65256|fgeneshPB_pg.11__249 External link hn SF
  hn PF No hits
jgi|Phybl1|78368|estExt_fgeneshPB_pg.C_140262 External link hn SF
  hn PF
jgi|Phybl1|69399|fgeneshPB_pg.27__117 External link hn SF
  hn PF
jgi|Phybl1|65155|fgeneshPB_pg.11__148 External link hn SF
  hn PF
jgi|Phybl1|23128|e_gw1.21.198.1 External link hn SF
  hn PF
jgi|Phybl1|15604|e_gw1.2.595.1 External link hn SF
  hn PF
jgi|Phybl1|58322|fgeneshPB_pg.1__186 External link hn SF
  hn PF
jgi|Phybl1|76766|estExt_fgeneshPB_pg.C_40297 External link hn SF
  hn PF
jgi|Phybl1|78717|estExt_fgeneshPB_pg.C_170230 External link hn SF
  hn PF
jgi|Phybl1|73490|fgeneshPB_pg.72__18 External link hn SF
  hn PF
jgi|Phybl1|62672|fgeneshPB_pg.5__510 External link hn SF
  hn PF
jgi|Phybl1|78415|estExt_fgeneshPB_pg.C_150071 External link hn SF
  hn PF
jgi|Phybl1|78960|estExt_fgeneshPB_pg.C_200193 External link hn SF
  hn PF
jgi|Phybl1|64551|fgeneshPB_pg.9__341 External link hn SF
  hn PF
jgi|Phybl1|22452|e_gw1.18.203.1 External link hn SF
  hn PF
jgi|Phybl1|61265|fgeneshPB_pg.3__890 External link hn SF
  hn PF
jgi|Phybl1|59259|fgeneshPB_pg.1__1123 External link hn SF
  hn PF
jgi|Phybl1|59985|fgeneshPB_pg.2__705 External link hn SF
  hn PF
jgi|Phybl1|77384|estExt_fgeneshPB_pg.C_70124 External link hn SF
  hn PF
jgi|Phybl1|14217|gw1.6.467.1 External link hn SF
  hn PF
jgi|Phybl1|71449|fgeneshPB_pg.42__71 External link hn SF
  hn PF
jgi|Phybl1|19803|e_gw1.8.241.1 External link hn SF
  hn PF
jgi|Phybl1|66308|fgeneshPB_pg.14__263 External link hn SF
  hn PF
jgi|Phybl1|78294|estExt_fgeneshPB_pg.C_140077 External link hn SF
  hn PF
jgi|Phybl1|14219|gw1.13.297.1 External link hn SF
  hn PF
jgi|Phybl1|22924|e_gw1.20.160.1 External link hn SF
  hn PF
jgi|Phybl1|8302|gw1.5.333.1 External link hn SF
  hn PF
jgi|Phybl1|14221|gw1.49.50.1 External link hn SF
  hn PF
jgi|Phybl1|76417|estExt_fgeneshPB_pg.C_30302 External link hn SF
  hn PF
jgi|Phybl1|79691|estExt_fgeneshPB_pg.C_310047 External link hn SF
  hn PF
jgi|Phybl1|22691|e_gw1.19.172.1 External link hn SF
  hn PF
jgi|Phybl1|69859|fgeneshPB_pg.30__58 External link hn SF
  hn PF
jgi|Phybl1|70904|fgeneshPB_pg.37__87 External link hn SF
  hn PF
jgi|Phybl1|65418|fgeneshPB_pg.12__51 External link hn SF
  hn PF
jgi|Phybl1|65457|fgeneshPB_pg.12__90 External link hn SF
  hn PF
jgi|Phybl1|64560|fgeneshPB_pg.9__350 External link hn SF
  hn PF
jgi|Phybl1|77304|estExt_fgeneshPB_pg.C_60410 External link hn SF
  hn PF
jgi|Phybl1|71231|fgeneshPB_pg.40__51 External link hn SF
  hn PF
jgi|Phybl1|69956|fgeneshPB_pg.31__7 External link hn SF
  hn PF
jgi|Phybl1|60699|fgeneshPB_pg.3__324 External link hn SF
  hn PF
jgi|Phybl1|75392|estExt_fgeneshPB_pg.C_10006 External link hn SF
  hn PF
jgi|Phybl1|77964|estExt_fgeneshPB_pg.C_110133 External link hn SF
  hn PF
jgi|Phybl1|62459|fgeneshPB_pg.5__297 External link hn SF
  hn PF
jgi|Phybl1|79992|estExt_fgeneshPB_pg.C_390043 External link hn SF
  hn PF
jgi|Phybl1|77254|estExt_fgeneshPB_pg.C_60303 External link hn SF
  hn PF
jgi|Phybl1|71770|fgeneshPB_pg.45__69 External link hn SF
  hn PF
jgi|Phybl1|60789|fgeneshPB_pg.3__414 External link hn SF
  hn PF
jgi|Phybl1|63422|fgeneshPB_pg.7__122 External link hn SF
  hn PF
jgi|Phybl1|79127|estExt_fgeneshPB_pg.C_220170 External link hn SF
  hn PF