DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Phaeodactylum tricornutum
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
source (downloaded: 2007-07-09)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Phatr2|45764|estExt_fgenesh1_pg.C_chr_80071 External link hr SF
  hr PF
jgi|Phatr2|54505|estExt_Phatr1_ua_kg.C_chr_80044 External link hr SF
  hr PF
jgi|Phatr2|45703|estExt_fgenesh1_pg.C_chr_70386 External link hr SF
  hr PF
jgi|Phatr2|37523|fgenesh1_pg.C_chr_13000133 External link hr SF
  hr PF
jgi|Phatr2|50045|estExt_fgenesh1_pg.C_chr_260084 External link hr SF
  hr PF
jgi|Phatr2|50039|estExt_fgenesh1_pg.C_chr_260078 External link hr SF
  hr PF
jgi|Phatr2|54048|estExt_Phatr1_ua_kg.C_chr_10140 External link hr SF
  hr PF
jgi|Phatr2|32031|fgenesh1_pg.C_chr_1000632 External link hr SF
  hr PF No hits
jgi|Phatr2|55073|estExt_Phatr1_ua_kg.C_chr_230007 External link hr SF
  hr PF
jgi|Phatr2|47369|estExt_fgenesh1_pg.C_chr_130171 External link hr SF
  hr PF
jgi|Phatr2|11994|e_gw1.7.261.1 External link hr SF
  hr PF
jgi|Phatr2|12051|e_gw1.7.267.1 External link hr SF
  hr PF
jgi|Phatr2|45240|estExt_fgenesh1_pg.C_chr_60252 External link hr SF
  hr PF No hits
jgi|Phatr2|46817|estExt_fgenesh1_pg.C_chr_110213 External link hr SF
  hr PF No hits
jgi|Phatr2|49526|estExt_fgenesh1_pg.C_chr_220213 External link hr SF
  hr PF
jgi|Phatr2|47905|estExt_fgenesh1_pg.C_chr_150162 External link hr SF
  hr PF
jgi|Phatr2|41601|fgenesh1_pg.C_chr_32000019 External link hr SF
  hr PF
jgi|Phatr2|15211|e_gw1.18.182.1 External link hr SF
  hr PF
jgi|Phatr2|12737|e_gw1.9.409.1 External link hr SF
  hr PF
jgi|Phatr2|49558|estExt_fgenesh1_pg.C_chr_230015 External link hr SF
  hr PF
jgi|Phatr2|45431|estExt_fgenesh1_pg.C_chr_70055 External link hr SF
  hr PF
jgi|Phatr2|44962|estExt_fgenesh1_pg.C_chr_50318 External link hr SF
  hr PF
jgi|Phatr2|44963|estExt_fgenesh1_pg.C_chr_50319 External link hr SF
  hr PF
jgi|Phatr2|14374|e_gw1.14.212.1 External link hr SF
  hr PF
jgi|Phatr2|55108|estExt_Phatr1_ua_kg.C_chr_240019 External link hr SF
  hr PF
jgi|Phatr2|45816|estExt_fgenesh1_pg.C_chr_80137 External link hr SF
  hr PF
jgi|Phatr2|48930|estExt_fgenesh1_pg.C_chr_200021 External link hr SF
  hr PF
jgi|Phatr2|45560|estExt_fgenesh1_pg.C_chr_70210 External link hr SF
  hr PF No hits
jgi|Phatr2|45392|estExt_fgenesh1_pg.C_chr_70007 External link hr SF
  hr PF
jgi|Phatr2|50481|estExt_fgenesh1_pg.C_chr_300059 External link hr SF
  hr PF No hits
jgi|Phatr2|33622|fgenesh1_pg.C_chr_3000541 External link hr SF
  hr PF
jgi|Phatr2|39786|fgenesh1_pg.C_chr_21000011 External link hr SF
  hr PF
jgi|Phatr2|45926|estExt_fgenesh1_pg.C_chr_80281 External link hr SF
  hr PF No hits
jgi|Phatr2|49596|estExt_fgenesh1_pg.C_chr_230060 External link hr SF
  hr PF
jgi|Phatr2|55070|estExt_Phatr1_ua_kg.C_chr_230004 External link hr SF
  hr PF
jgi|Phatr2|44029|estExt_fgenesh1_pg.C_chr_30296 External link hr SF
  hr PF
jgi|Phatr2|45206|estExt_fgenesh1_pg.C_chr_60210 External link hr SF
  hr PF
jgi|Phatr2|43364|estExt_fgenesh1_pg.C_chr_20104 External link hr SF
  hr PF
jgi|Phatr2|42714|estExt_fgenesh1_pg.C_chr_10366 External link hr SF
  hr PF
jgi|Phatr2|44750|estExt_fgenesh1_pg.C_chr_50050 External link hr SF
  hr PF No hits
jgi|Phatr2|48702|estExt_fgenesh1_pg.C_chr_180253 External link hr SF
  hr PF No hits
jgi|Phatr2|40994|fgenesh1_pg.C_chr_27000030 External link hr SF
  hr PF No hits
jgi|Phatr2|43051|estExt_fgenesh1_pg.C_chr_10784 External link hr SF
  hr PF
jgi|Phatr2|49136|estExt_fgenesh1_pg.C_chr_210008 External link hr SF
  hr PF
jgi|Phatr2|45559|estExt_fgenesh1_pg.C_chr_70209 External link hr SF
  hr PF No hits
jgi|Phatr2|49567|estExt_fgenesh1_pg.C_chr_230026 External link hr SF
  hr PF No hits
jgi|Phatr2|42824|estExt_fgenesh1_pg.C_chr_10510 External link hr SF
  hr PF
jgi|Phatr2|47181|estExt_fgenesh1_pg.C_chr_120292 External link hr SF
  hr PF
jgi|Phatr2|33380|fgenesh1_pg.C_chr_3000299 External link hr SF
  hr PF
jgi|Phatr2|34724|fgenesh1_pg.C_chr_6000097 External link hr SF
  hr PF