DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Homo sapiens 49_36k (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
source (downloaded: 2008-03-21)
local copy of protein fasta file

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
ENSP00000259803 External link hs SF
Gene name: GCM1  hs PF
ENSP00000368805 External link hs SF
  hs PF
ENSP00000371686 External link hs SF
  hs PF
ENSP00000371690 External link hs SF
  hs PF
ENSP00000371711 External link hs SF
  hs PF
ENSP00000305785 External link hs SF
  hs PF
ENSP00000319651 External link hs SF
Gene name: DMRTA1  hs PF
ENSP00000360500 External link hs SF
  hs PF
ENSP00000190165 External link hs SF
Gene name: DMRT3  hs PF
ENSP00000350865 External link hs SF
  hs PF
ENSP00000259622 External link hs SF
Gene name: DMRT2  hs PF
ENSP00000269945 External link hs SF
  hs PF
ENSP00000264808 External link hs SF
Gene name: PRDM5  hs PF
ENSP00000261364 External link hs SF
Gene name: PRDM6  hs PF
ENSP00000253008 External link hs SF
Gene name: PRDM12  hs PF
ENSP00000264596 External link hs SF
Gene name: NEIL3  hs PF
ENSP00000291582 External link hs SF
  hs PF
ENSP00000351488 External link hs SF
  hs PF
ENSP00000181092 External link hs SF
  hs PF
ENSP00000375899 External link hs SF
  hs PF
ENSP00000345846 External link hs SF
  hs PF
ENSP00000342096 External link hs SF
Gene name: SP140  hs PF
ENSP00000258381 External link hs SF
  hs PF
ENSP00000243810 External link hs SF
  hs PF
ENSP00000379811 External link hs SF
  hs PF
ENSP00000375902 External link hs SF
  hs PF
ENSP00000343023 External link hs SF
Gene name: SP100  hs PF
ENSP00000264052 External link hs SF
  hs PF
ENSP00000344049 External link hs SF
  hs PF
ENSP00000359094 External link hs SF
  hs PF
ENSP00000362922 External link hs SF
  hs PF
ENSP00000381890 External link hs SF
  hs PF
ENSP00000373456 External link hs SF
  hs PF
ENSP00000341902 External link hs SF
Gene name: DEAF1  hs PF
ENSP00000294409 External link hs SF
  hs PF
ENSP00000258382 External link hs SF
Gene name: SP110  hs PF
ENSP00000353043 External link hs SF
  hs PF
ENSP00000371846 External link hs SF
  hs PF
ENSP00000359086 External link hs SF
  hs PF
ENSP00000355186 External link hs SF
Gene name: GMEB1  hs PF
ENSP00000266068 External link hs SF
Gene name: GMEB2  hs PF
ENSP00000357121 External link hs SF
  hs PF
ENSP00000284898 External link hs SF
Gene name: L3MBTL4  hs PF
ENSP00000318543 External link hs SF
  hs PF
ENSP00000354526 External link hs SF
Gene name: L3MBTL3  hs PF
ENSP00000357118 External link hs SF
  hs PF
ENSP00000362227 External link hs SF
  hs PF
ENSP00000382976 External link hs SF
  hs PF
ENSP00000382975 External link hs SF
  hs PF
ENSP00000362226 External link hs SF
  hs PF