DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Ciona savignyi 49_2f (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSCSAVP00000018470 External link i0 SF
  i0 PF
ENSCSAVP00000000574 External link i0 SF
  i0 PF
ENSCSAVP00000005722 External link i0 SF
  i0 PF
ENSCSAVP00000011763 External link i0 SF
  i0 PF
ENSCSAVP00000010881 External link i0 SF
  i0 PF
ENSCSAVP00000019680 External link i0 SF
  i0 PF
ENSCSAVP00000008085 External link i0 SF
  i0 PF
ENSCSAVP00000020060 External link i0 SF
  i0 PF
ENSCSAVP00000001841 External link i0 SF
  i0 PF
ENSCSAVP00000015545 External link i0 SF
  i0 PF
ENSCSAVP00000001628 External link i0 SF
  i0 PF
ENSCSAVP00000001063 External link i0 SF
  i0 PF
ENSCSAVP00000001638 External link i0 SF
  i0 PF
ENSCSAVP00000014251 External link i0 SF
  i0 PF
ENSCSAVP00000013993 External link i0 SF
  i0 PF
ENSCSAVP00000010272 External link i0 SF
  i0 PF
ENSCSAVP00000016984 External link i0 SF
  i0 PF
ENSCSAVP00000000134 External link i0 SF
  i0 PF
ENSCSAVP00000011584 External link i0 SF
  i0 PF
ENSCSAVP00000003227 External link i0 SF
  i0 PF
ENSCSAVP00000013351 External link i0 SF
  i0 PF
ENSCSAVP00000009501 External link i0 SF
  i0 PF
ENSCSAVP00000005522 External link i0 SF
  i0 PF
ENSCSAVP00000003417 External link i0 SF
  i0 PF
ENSCSAVP00000004524 External link i0 SF
  i0 PF
ENSCSAVP00000008270 External link i0 SF
  i0 PF
ENSCSAVP00000014254 External link i0 SF
  i0 PF
ENSCSAVP00000008968 External link i0 SF
  i0 PF
ENSCSAVP00000014468 External link i0 SF
  i0 PF
ENSCSAVP00000001198 External link i0 SF
  i0 PF
ENSCSAVP00000003097 External link i0 SF
  i0 PF
ENSCSAVP00000011297 External link i0 SF
  i0 PF
ENSCSAVP00000000511 External link i0 SF
  i0 PF
ENSCSAVP00000007528 External link i0 SF
  i0 PF
ENSCSAVP00000015116 External link i0 SF
  i0 PF
ENSCSAVP00000001235 External link i0 SF
  i0 PF
ENSCSAVP00000010428 External link i0 SF
  i0 PF
ENSCSAVP00000003335 External link i0 SF
  i0 PF
ENSCSAVP00000012927 External link i0 SF
  i0 PF
ENSCSAVP00000016271 External link i0 SF
  i0 PF
ENSCSAVP00000016922 External link i0 SF
  i0 PF
ENSCSAVP00000001157 External link i0 SF
  i0 PF
ENSCSAVP00000007822 External link i0 SF
  i0 PF
ENSCSAVP00000003048 External link i0 SF
  i0 PF
ENSCSAVP00000018656 External link i0 SF
  i0 PF
ENSCSAVP00000011368 External link i0 SF
  i0 PF
ENSCSAVP00000003670 External link i0 SF
  i0 PF
ENSCSAVP00000017259 External link i0 SF
  i0 PF
ENSCSAVP00000007987 External link i0 SF
  i0 PF
ENSCSAVP00000011520 External link i0 SF
  i0 PF