DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Capitella sp. I
Taxonomy: Eukaryota; Metazoa; Annelida; Polychaeta; Scolecida; Capitellida; Capitellidae; Capitella
source (downloaded: 2007-10-02)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Capca1|133139|e_gw1.1.48.1 External link i1 SF
  i1 PF
jgi|Capca1|50640|gw1.58.79.1 External link i1 SF
  i1 PF
jgi|Capca1|96501|e_gw1.21223.2.1 External link i1 SF
  i1 PF
jgi|Capca1|228920|estExt_fgenesh1_pg.C_4980001 External link i1 SF
  i1 PF
jgi|Capca1|81132|gw1.18.154.1 External link i1 SF
  i1 PF
jgi|Capca1|81129|gw1.451.51.1 External link i1 SF
  i1 PF
jgi|Capca1|194471|fgenesh1_pg.C_scaffold_85000002 External link i1 SF
  i1 PF
jgi|Capca1|75757|gw1.2103.2.1 External link i1 SF
  i1 PF
jgi|Capca1|103287|e_gw1.24.122.1 External link i1 SF
  i1 PF
jgi|Capca1|202965|fgenesh1_pg.C_scaffold_56000002 External link i1 SF
  i1 PF
jgi|Capca1|228499|estExt_fgenesh1_pg.C_6640010 External link i1 SF
  i1 PF
jgi|Capca1|210805|fgenesh1_pg.C_scaffold_41000014 External link i1 SF
  i1 PF
jgi|Capca1|195572|fgenesh1_pg.C_scaffold_2457000001 External link i1 SF
  i1 PF
jgi|Capca1|219080|estExt_fgenesh1_pg.C_1540031 External link i1 SF
  i1 PF
jgi|Capca1|228077|estExt_fgenesh1_pg.C_2190016 External link i1 SF
  i1 PF
jgi|Capca1|228571|estExt_fgenesh1_pg.C_1430006 External link i1 SF
  i1 PF
jgi|Capca1|221276|estExt_fgenesh1_pg.C_590005 External link i1 SF
  i1 PF
jgi|Capca1|161824|estExt_Genewise1.C_1810024 External link i1 SF
  i1 PF
jgi|Capca1|222293|estExt_fgenesh1_pg.C_490039 External link i1 SF
  i1 PF
jgi|Capca1|225922|estExt_fgenesh1_pg.C_2020024 External link i1 SF
  i1 PF
jgi|Capca1|224799|estExt_fgenesh1_pg.C_1500026 External link i1 SF
  i1 PF
jgi|Capca1|106550|e_gw1.230.61.1 External link i1 SF
  i1 PF
jgi|Capca1|190746|fgenesh1_pg.C_scaffold_698000012 External link i1 SF
  i1 PF
jgi|Capca1|19718|estExt_fgenesh1_pm.C_5620002 External link i1 SF
  i1 PF
jgi|Capca1|181900|estExt_Genewise1Plus.C_4160014 External link i1 SF
  i1 PF
jgi|Capca1|154981|estExt_Genewise1.C_8380006 External link i1 SF
  i1 PF
jgi|Capca1|178429|estExt_Genewise1Plus.C_840026 External link i1 SF
  i1 PF
jgi|Capca1|24064|gw1.23.15.1 External link i1 SF
  i1 PF
jgi|Capca1|82537|gw1.153.69.1 External link i1 SF
  i1 PF
jgi|Capca1|43751|gw1.495.6.1 External link i1 SF
  i1 PF
jgi|Capca1|228137|estExt_fgenesh1_pg.C_290037 External link i1 SF
  i1 PF
jgi|Capca1|167444|estExt_Genewise1Plus.C_4950004 External link i1 SF
  i1 PF
jgi|Capca1|168913|estExt_Genewise1Plus.C_4010030 External link i1 SF
  i1 PF
jgi|Capca1|167213|estExt_Genewise1Plus.C_530068 External link i1 SF
  i1 PF
jgi|Capca1|97456|e_gw1.401.12.1 External link i1 SF
  i1 PF
jgi|Capca1|132489|e_gw1.138.60.1 External link i1 SF
  i1 PF
jgi|Capca1|149492|estExt_Genewise1.C_8330003 External link i1 SF
  i1 PF
jgi|Capca1|175842|estExt_Genewise1Plus.C_7820010 External link i1 SF
  i1 PF
jgi|Capca1|101804|e_gw1.317.53.1 External link i1 SF
  i1 PF
jgi|Capca1|130016|e_gw1.272.6.1 External link i1 SF
  i1 PF
jgi|Capca1|121659|e_gw1.218.30.1 External link i1 SF
  i1 PF
jgi|Capca1|53417|gw1.72.82.1 External link i1 SF
  i1 PF
jgi|Capca1|153528|estExt_Genewise1.C_720104 External link i1 SF
  i1 PF
jgi|Capca1|227950|estExt_fgenesh1_pg.C_60043 External link i1 SF
  i1 PF
jgi|Capca1|219555|estExt_fgenesh1_pg.C_1110036 External link i1 SF
  i1 PF
jgi|Capca1|224811|estExt_fgenesh1_pg.C_2450002 External link i1 SF
  i1 PF
jgi|Capca1|168520|estExt_Genewise1Plus.C_2410011 External link i1 SF
  i1 PF
jgi|Capca1|224377|estExt_fgenesh1_pg.C_2830023 External link i1 SF
  i1 PF
jgi|Capca1|170275|estExt_Genewise1Plus.C_3170023 External link i1 SF
  i1 PF
jgi|Capca1|177005|estExt_Genewise1Plus.C_6500023 External link i1 SF
  i1 PF