DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Micromonas sp. RCC299
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Prasinophyceae; Mamiellales; Mamiellaceae; Micromonas
source (downloaded: 2008-02-16)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|MicpuN2|64506|EuGene.1500010227 External link ij SF
  ij PF
jgi|MicpuN2|64832|EuGene.1600010193 External link ij SF
  ij PF
jgi|MicpuN2|54855|EuGene.0100010082 External link ij SF
  ij PF
jgi|MicpuN2|52764|est_orfs.Chr_04_2635_3202256:1 External link ij SF
  ij PF
jgi|MicpuN2|98056|fgenesh2_pm.C_Chr_11000039 External link ij SF
  ij PF
jgi|MicpuN2|63537|EuGene.1300010187 External link ij SF
  ij PF
jgi|MicpuN2|61072|EuGene.0900010055 External link ij SF
  ij PF
jgi|MicpuN2|104880|estExt_fgenesh2_kg.C_Chr_070015 External link ij SF
  ij PF
jgi|MicpuN2|56474|EuGene.0200010851 External link ij SF
  ij PF
jgi|MicpuN2|54162|est_orfs.Chr_02_4033_3200241:1 External link ij SF
  ij PF
jgi|MicpuN2|105585|estExt_fgenesh2_pg.C_Chr_050217 External link ij SF
  ij PF
jgi|MicpuN2|107704|est_cluster_kg.Chr_02__68__3202028:1 External link ij SF
  ij PF
jgi|MicpuN2|105435|estExt_fgenesh2_pg.C_Chr_040222 External link ij SF
  ij PF
jgi|MicpuN2|71349|gw2.08.381.1 External link ij SF
  ij PF
jgi|MicpuN2|73030|gw2.08.475.1 External link ij SF
  ij PF
jgi|MicpuN2|108722|est_cluster_kg.Chr_08__5__3199776:1 External link ij SF
  ij PF
jgi|MicpuN2|74715|gw2.04.749.1 External link ij SF
  ij PF
jgi|MicpuN2|80563|e_gw2.04.751.1 External link ij SF
  ij PF
jgi|MicpuN2|62992|EuGene.1200010164 External link ij SF
  ij PF
jgi|MicpuN2|104463|fgenesh2_pg.C_Chr_15000235 External link ij SF
  ij PF
jgi|MicpuN2|68117|gw2.03.238.1 External link ij SF
  ij PF
jgi|MicpuN2|88904|e_gw2.16.271.1 External link ij SF
  ij PF
jgi|MicpuN2|109313|est_cluster_kg.Chr_12__95__3200404:1 External link ij SF
  ij PF
jgi|MicpuN2|62160|EuGene.1000010497 External link ij SF
  ij PF No hits
jgi|MicpuN2|101075|fgenesh2_pg.C_Chr_06000276 External link ij SF
  ij PF
jgi|MicpuN2|90161|estExt_Genewise2.C_Chr_021073 External link ij SF
  ij PF
jgi|MicpuN2|64742|EuGene.1600010103 External link ij SF
  ij PF
jgi|MicpuN2|71806|gw2.04.526.1 External link ij SF
  ij PF
jgi|MicpuN2|70858|gw2.13.288.1 External link ij SF
  ij PF
jgi|MicpuN2|102382|fgenesh2_pg.C_Chr_09000300 External link ij SF
  ij PF
jgi|MicpuN2|73211|gw2.08.479.1 External link ij SF
  ij PF
jgi|MicpuN2|74270|gw2.11.554.1 External link ij SF
  ij PF
jgi|MicpuN2|64005|EuGene.1400010140 External link ij SF
  ij PF
jgi|MicpuN2|55221|EuGene.0100010448 External link ij SF
  ij PF
jgi|MicpuN2|105210|estExt_fgenesh2_pg.C_Chr_020539 External link ij SF
  ij PF No hits
jgi|MicpuN2|102635|fgenesh2_pg.C_Chr_10000121 External link ij SF
  ij PF No hits
jgi|MicpuN2|60231|EuGene.0700010516 External link ij SF
  ij PF
jgi|MicpuN2|62531|EuGene.1100010317 External link ij SF
  ij PF
jgi|MicpuN2|57955|EuGene.0400010484 External link ij SF
  ij PF
jgi|MicpuN2|102412|fgenesh2_pg.C_Chr_09000330 External link ij SF
  ij PF
jgi|MicpuN2|106146|estExt_fgenesh2_pg.C_Chr_100175 External link ij SF
  ij PF
jgi|MicpuN2|55535|EuGene.0100010762 External link ij SF
  ij PF
jgi|MicpuN2|55850|EuGene.0200010227 External link ij SF
  ij PF
jgi|MicpuN2|52115|est_orfs.Chr_03_1986_3201974:1 External link ij SF
  ij PF No hits
jgi|MicpuN2|83180|e_gw2.06.845.1 External link ij SF
  ij PF
jgi|MicpuN2|55629|EuGene.0200010006 External link ij SF
  ij PF
jgi|MicpuN2|62171|EuGene.1000010508 External link ij SF
  ij PF
jgi|MicpuN2|55723|EuGene.0200010100 External link ij SF
  ij PF
jgi|MicpuN2|109344|est_cluster_kg.Chr_13__27__3199715:1 External link ij SF
  ij PF
jgi|MicpuN2|56966|EuGene.0300010394 External link ij SF
  ij PF