DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Pichia stipitis CBS 6054
Taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Pichia
source (downloaded: 2007-07-09)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Picst3|28241|fgenesh1_pg.C_chr_1.1000255 External link ip SF
  ip PF
jgi|Picst3|66716|estExt_fgenesh1_pg.C_chr_1.20386 External link ip SF
  ip PF
jgi|Picst3|67944|estExt_fgenesh1_pg.C_chr_5.10591 External link ip SF
  ip PF
jgi|Picst3|30840|fgenesh1_pg.C_chr_3.1000427 External link ip SF
  ip PF
jgi|Picst3|43119|e_gwh1.3.1.1148.1 External link ip SF
  ip PF
jgi|Picst3|32587|fgenesh1_pg.C_chr_6.1000068 External link ip SF
  ip PF
jgi|Picst3|66895|estExt_fgenesh1_pg.C_chr_2.10379 External link ip SF
  ip PF
jgi|Picst3|80055|estExt_gwp_genewisePlus_worm.C_chr_1.10003 External link ip SF
  ip PF
jgi|Picst3|66069|estExt_fgenesh1_pm.C_chr_7.10092 External link ip SF
  ip PF
jgi|Picst3|29072|fgenesh1_pg.C_chr_1.2000245 External link ip SF
  ip PF
jgi|Picst3|36318|fgenesh1_pm.C_chr_5.1000186 External link ip SF
  ip PF No hits
jgi|Picst3|31414|fgenesh1_pg.C_chr_4.1000285 External link ip SF
  ip PF
jgi|Picst3|28094|fgenesh1_pg.C_chr_1.1000108 External link ip SF
  ip PF
jgi|Picst3|31032|fgenesh1_pg.C_chr_3.1000619 External link ip SF
  ip PF
jgi|Picst3|51784|e_gww1.1.1.212.1 External link ip SF
  ip PF
jgi|Picst3|10382|gwh1.4.1.1119.1 External link ip SF
  ip PF
jgi|Picst3|81861|estExt_gwp_genewisePlus_worm.C_chr_2.11296 External link ip SF
  ip PF
jgi|Picst3|40526|e_gwh1.2.1.1777.1 External link ip SF
  ip PF
jgi|Picst3|33076|fgenesh1_pg.C_chr_6.1000557 External link ip SF
  ip PF
jgi|Picst3|85839|estExt_gwp_genewisePlus_human.C_chr_1.10094 External link ip SF
  ip PF
jgi|Picst3|57167|e_gww1.3.1.1314.1 External link ip SF
  ip PF
jgi|Picst3|51603|e_gww1.1.1.1491.1 External link ip SF
  ip PF
jgi|Picst3|66925|estExt_fgenesh1_pg.C_chr_2.10449 External link ip SF
  ip PF
jgi|Picst3|61599|e_gww1.6.1.89.1 External link ip SF
  ip PF
jgi|Picst3|36494|fgenesh1_pm.C_chr_6.1000003 External link ip SF
  ip PF
jgi|Picst3|31755|fgenesh1_pg.C_chr_4.1000626 External link ip SF
  ip PF
jgi|Picst3|622|gwh1.2.1.110.1 External link ip SF
  ip PF
jgi|Picst3|80414|estExt_gwp_genewisePlus_worm.C_chr_1.10867 External link ip SF
  ip PF
jgi|Picst3|30024|fgenesh1_pg.C_chr_2.1000700 External link ip SF
  ip PF
jgi|Picst3|64954|estExt_fgenesh1_pm.C_chr_1.10450 External link ip SF
  ip PF
jgi|Picst3|82707|estExt_gwp_genewisePlus_worm.C_chr_3.10726 External link ip SF
  ip PF
jgi|Picst3|87861|estExt_gwp_genewisePlus_human.C_chr_2.11897 External link ip SF
  ip PF
jgi|Picst3|29298|fgenesh1_pg.C_chr_1.2000471 External link ip SF
  ip PF No hits
jgi|Picst3|37775|e_gwh1.1.1.75.1 External link ip SF
  ip PF
jgi|Picst3|41012|e_gwh1.2.1.208.1 External link ip SF
  ip PF
jgi|Picst3|60934|e_gww1.5.1.126.1 External link ip SF
  ip PF
jgi|Picst3|68074|estExt_fgenesh1_pg.C_chr_6.10290 External link ip SF
  ip PF
jgi|Picst3|67467|estExt_fgenesh1_pg.C_chr_4.10079 External link ip SF
  ip PF
jgi|Picst3|30683|fgenesh1_pg.C_chr_3.1000270 External link ip SF
  ip PF
jgi|Picst3|3849|gwh1.6.1.468.1 External link ip SF
  ip PF
jgi|Picst3|47947|e_gwh1.6.1.256.1 External link ip SF
  ip PF
jgi|Picst3|15419|gww1.7.1.139.1 External link ip SF
  ip PF
jgi|Picst3|66618|estExt_fgenesh1_pg.C_chr_1.20163 External link ip SF
  ip PF
jgi|Picst3|30770|fgenesh1_pg.C_chr_3.1000357 External link ip SF
  ip PF
jgi|Picst3|28111|fgenesh1_pg.C_chr_1.1000125 External link ip SF
  ip PF
jgi|Picst3|52735|e_gww1.1.1.1531.1 External link ip SF
  ip PF
jgi|Picst3|30977|fgenesh1_pg.C_chr_3.1000564 External link ip SF
  ip PF
jgi|Picst3|935|gwh1.8.1.74.1 External link ip SF
  ip PF
jgi|Picst3|65252|estExt_fgenesh1_pm.C_chr_2.10383 External link ip SF
  ip PF No hits
jgi|Picst3|62201|e_gww1.6.1.324.1 External link ip SF
  ip PF