DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Micromonas sp. CCMP490
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Prasinophyceae; Mamiellales; Mamiellaceae; Micromonas
source (downloaded: 2008-02-16)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|MicpuC2|62712 External link iq SF
  iq PF
jgi|MicpuC2|60218 External link iq SF
  iq PF
jgi|MicpuC2|58710 External link iq SF
  iq PF
jgi|MicpuC2|59356 External link iq SF
  iq PF
jgi|MicpuC2|62030 External link iq SF
  iq PF
jgi|MicpuC2|59732 External link iq SF
  iq PF
jgi|MicpuC2|39370 External link iq SF
  iq PF
jgi|MicpuC2|61701 External link iq SF
  iq PF
jgi|MicpuC2|47201 External link iq SF
  iq PF
jgi|MicpuC2|38886 External link iq SF
  iq PF
jgi|MicpuC2|48598 External link iq SF
  iq PF
jgi|MicpuC2|52743 External link iq SF
  iq PF
jgi|MicpuC2|9119 External link iq SF
  iq PF
jgi|MicpuC2|9138 External link iq SF
  iq PF
jgi|MicpuC2|51893 External link iq SF
  iq PF
jgi|MicpuC2|20533 External link iq SF
  iq PF
jgi|MicpuC2|42817 External link iq SF
  iq PF
jgi|MicpuC2|8371 External link iq SF
  iq PF
jgi|MicpuC2|9797 External link iq SF
  iq PF
jgi|MicpuC2|50093 External link iq SF
  iq PF
jgi|MicpuC2|35442 External link iq SF
  iq PF
jgi|MicpuC2|30105 External link iq SF
  iq PF No hits
jgi|MicpuC2|7546 External link iq SF
  iq PF
jgi|MicpuC2|16745 External link iq SF
  iq PF
jgi|MicpuC2|7910 External link iq SF
  iq PF
jgi|MicpuC2|67868 External link iq SF
  iq PF
jgi|MicpuC2|46434 External link iq SF
  iq PF No hits
jgi|MicpuC2|8397 External link iq SF
  iq PF
jgi|MicpuC2|40168 External link iq SF
  iq PF
jgi|MicpuC2|55167 External link iq SF
  iq PF
jgi|MicpuC2|65487 External link iq SF
  iq PF
jgi|MicpuC2|9608 External link iq SF
  iq PF
jgi|MicpuC2|56140 External link iq SF
  iq PF
jgi|MicpuC2|53235 External link iq SF
  iq PF
jgi|MicpuC2|62709 External link iq SF
  iq PF No hits
jgi|MicpuC2|60136 External link iq SF
  iq PF
jgi|MicpuC2|9740 External link iq SF
  iq PF
jgi|MicpuC2|9099 External link iq SF
  iq PF
jgi|MicpuC2|47634 External link iq SF
  iq PF
jgi|MicpuC2|29430 External link iq SF
  iq PF
jgi|MicpuC2|12069 External link iq SF
  iq PF
jgi|MicpuC2|47661 External link iq SF
  iq PF
jgi|MicpuC2|55764 External link iq SF
  iq PF
jgi|MicpuC2|9563 External link iq SF
  iq PF
jgi|MicpuC2|48162 External link iq SF
  iq PF
jgi|MicpuC2|48763 External link iq SF
  iq PF
jgi|MicpuC2|4731 External link iq SF
  iq PF
jgi|MicpuC2|43793 External link iq SF
  iq PF
jgi|MicpuC2|59938 External link iq SF
  iq PF
jgi|MicpuC2|32031 External link iq SF
  iq PF