DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Ciona intestinalis 49_2i (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSCINP00000012177 External link is SF
  is PF
ENSCINP00000006714 External link is SF
  is PF
ENSCINP00000007026 External link is SF
  is PF
ENSCINP00000015236 External link is SF
  is PF
ENSCINP00000008413 External link is SF
  is PF
ENSCINP00000018331 External link is SF
  is PF
ENSCINP00000029252 External link is SF
  is PF
ENSCINP00000018330 External link is SF
  is PF
ENSCINP00000021230 External link is SF
  is PF
ENSCINP00000022287 External link is SF
  is PF
ENSCINP00000012028 External link is SF
  is PF
ENSCINP00000022288 External link is SF
  is PF
ENSCINP00000012034 External link is SF
  is PF
ENSCINP00000022289 External link is SF
  is PF
ENSCINP00000025883 External link is SF
  is PF
ENSCINP00000025882 External link is SF
  is PF
ENSCINP00000018414 External link is SF
  is PF
ENSCINP00000018415 External link is SF
  is PF
ENSCINP00000029510 External link is SF
  is PF
ENSCINP00000027906 External link is SF
  is PF
ENSCINP00000009159 External link is SF
  is PF
ENSCINP00000004784 External link is SF
  is PF
ENSCINP00000024308 External link is SF
  is PF
ENSCINP00000009479 External link is SF
  is PF
ENSCINP00000003701 External link is SF
  is PF
ENSCINP00000024068 External link is SF
  is PF
ENSCINP00000024307 External link is SF
  is PF
ENSCINP00000010629 External link is SF
  is PF
ENSCINP00000004382 External link is SF
  is PF
ENSCINP00000022357 External link is SF
  is PF
ENSCINP00000014778 External link is SF
  is PF
ENSCINP00000024306 External link is SF
  is PF
ENSCINP00000022358 External link is SF
  is PF
ENSCINP00000019457 External link is SF
  is PF
ENSCINP00000003724 External link is SF
  is PF
ENSCINP00000024106 External link is SF
  is PF
ENSCINP00000014081 External link is SF
  is PF
ENSCINP00000024108 External link is SF
  is PF
ENSCINP00000025881 External link is SF
  is PF
ENSCINP00000028165 External link is SF
  is PF
ENSCINP00000000768 External link is SF
  is PF
ENSCINP00000028166 External link is SF
  is PF
ENSCINP00000019512 External link is SF
  is PF
ENSCINP00000006352 External link is SF
  is PF
ENSCINP00000006308 External link is SF
  is PF
ENSCINP00000006366 External link is SF
  is PF
ENSCINP00000001139 External link is SF
  is PF
ENSCINP00000001925 External link is SF
  is PF
ENSCINP00000001930 External link is SF
  is PF
ENSCINP00000001147 External link is SF
  is PF