DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Ciona intestinalis 49_2i (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSCINP00000012177 External link it SF
  it PF
ENSCINP00000006714 External link it SF
  it PF
ENSCINP00000015236 External link it SF
  it PF
ENSCINP00000007026 External link it SF
  it PF
ENSCINP00000008413 External link it SF
  it PF
ENSCINP00000018331 External link it SF
  it PF
ENSCINP00000029252 External link it SF
  it PF
ENSCINP00000021230 External link it SF
  it PF
ENSCINP00000012028 External link it SF
  it PF
ENSCINP00000022288 External link it SF
  it PF
ENSCINP00000025883 External link it SF
  it PF
ENSCINP00000018415 External link it SF
  it PF
ENSCINP00000027906 External link it SF
  it PF
ENSCINP00000009159 External link it SF
  it PF
ENSCINP00000029510 External link it SF
  it PF
ENSCINP00000014778 External link it SF
  it PF
ENSCINP00000003701 External link it SF
  it PF
ENSCINP00000022357 External link it SF
  it PF
ENSCINP00000004784 External link it SF
  it PF
ENSCINP00000009479 External link it SF
  it PF
ENSCINP00000024308 External link it SF
  it PF
ENSCINP00000024106 External link it SF
  it PF
ENSCINP00000014081 External link it SF
  it PF
ENSCINP00000000768 External link it SF
  it PF
ENSCINP00000019512 External link it SF
  it PF
ENSCINP00000006352 External link it SF
  it PF
ENSCINP00000001139 External link it SF
  it PF
ENSCINP00000006294 External link it SF
  it PF
ENSCINP00000007111 External link it SF
  it PF
ENSCINP00000015309 External link it SF
  it PF
ENSCINP00000010755 External link it SF
  it PF
ENSCINP00000006934 External link it SF
  it PF
ENSCINP00000003145 External link it SF
  it PF
ENSCINP00000001121 External link it SF
  it PF
ENSCINP00000001946 External link it SF
  it PF
ENSCINP00000008581 External link it SF
  it PF
ENSCINP00000010879 External link it SF
  it PF
ENSCINP00000023296 External link it SF
  it PF
ENSCINP00000023299 External link it SF
  it PF
ENSCINP00000026609 External link it SF
  it PF
ENSCINP00000011822 External link it SF
  it PF
ENSCINP00000002601 External link it SF
  it PF
ENSCINP00000004752 External link it SF
  it PF
ENSCINP00000027657 External link it SF
  it PF
ENSCINP00000010051 External link it SF
  it PF
ENSCINP00000014497 External link it SF
  it PF
ENSCINP00000007963 External link it SF
  it PF
ENSCINP00000014749 External link it SF
  it PF
ENSCINP00000014234 External link it SF
  it PF
ENSCINP00000005138 External link it SF
  it PF