DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Lotus japonicus Early Assembly
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
source (downloaded: 2007-07-20)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
AP006538_24.1 External link jp SF
  jp PF
AP006541_21.1 External link jp SF
  jp PF
AP006358_1.1 External link jp SF
  jp PF
AP004505_5.1 External link jp SF
  jp PF
AP006403_10.1 External link jp SF
  jp PF
AP004486_7.1 External link jp SF
  jp PF
AP006374_24.1 External link jp SF
  jp PF
AP004937_6.1 External link jp SF
  jp PF
AP006113_38.1 External link jp SF
  jp PF
AP004946_17.1 External link jp SF
  jp PF
AP004578_21.1 External link jp SF
  jp PF
AP006395_8.1 External link jp SF
  jp PF
AP004625_6.1 External link jp SF
  jp PF
AP006653_30.1 External link jp SF
  jp PF
AP006142_28.1 External link jp SF
  jp PF
AP004516_1.1 External link jp SF
  jp PF
AP006653_14.1 External link jp SF
  jp PF
AP004526_3.1 External link jp SF
  jp PF
AP006379_1.1 External link jp SF
  jp PF
AP006109_21.1 External link jp SF
  jp PF
AP006551_15.1 External link jp SF
  jp PF
AP006357_3.1 External link jp SF
  jp PF
AP006697_1.1 External link jp SF
  jp PF
AP006635_23.1 External link jp SF
  jp PF
AP004953_7.1 External link jp SF
  jp PF
AP006552_21.1 External link jp SF
  jp PF
AP006096_16.1 External link jp SF
  jp PF
AP004525_3.1 External link jp SF
  jp PF
AP004536_6.1 External link jp SF
  jp PF
AP006427_16.1 External link jp SF
  jp PF
AP006692_28.1 External link jp SF
  jp PF
AP004467_22.1 External link jp SF
  jp PF
AP006113_20.1 External link jp SF
  jp PF
AP006428_5.1 External link jp SF
  jp PF
AP006119_6.1 External link jp SF
  jp PF
AP006419_5.1 External link jp SF
  jp PF
AP004533_28.1 External link jp SF
  jp PF
AP006677_15.1 External link jp SF
  jp PF
AP004902_43.1 External link jp SF
  jp PF
AP004956_23.1 External link jp SF
  jp PF
AP006139_10.1 External link jp SF
  jp PF
AP006412_8.1 External link jp SF
  jp PF
AP006411_3.1 External link jp SF
  jp PF
AP007295_1.1 External link jp SF
  jp PF
AP006655_2.1 External link jp SF
  jp PF
AP006381_2.1 External link jp SF
  jp PF
AP004489_19.1 External link jp SF
  jp PF
AP004911_17.1 External link jp SF
  jp PF
AP006131_36.1 External link jp SF
  jp PF
AP006426_10.1 External link jp SF
  jp PF