DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Loxodonta africana 49_1d (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSLAFP00000010109 External link lk SF
  lk PF
ENSLAFP00000006284 External link lk SF
  lk PF
ENSLAFP00000000664 External link lk SF
  lk PF
ENSLAFP00000011607 External link lk SF
  lk PF
ENSLAFP00000008906 External link lk SF
  lk PF
ENSLAFP00000011245 External link lk SF
  lk PF
ENSLAFP00000005864 External link lk SF
  lk PF
ENSLAFP00000001923 External link lk SF
  lk PF
ENSLAFP00000008302 External link lk SF
  lk PF
ENSLAFP00000010315 External link lk SF
  lk PF
ENSLAFP00000001920 External link lk SF
  lk PF
ENSLAFP00000009900 External link lk SF
  lk PF
ENSLAFP00000005615 External link lk SF
  lk PF
ENSLAFP00000010281 External link lk SF
  lk PF
ENSLAFP00000013091 External link lk SF
  lk PF
ENSLAFP00000014732 External link lk SF
  lk PF
ENSLAFP00000013815 External link lk SF
  lk PF
ENSLAFP00000015211 External link lk SF
  lk PF
ENSLAFP00000010254 External link lk SF
  lk PF
ENSLAFP00000014912 External link lk SF
  lk PF
ENSLAFP00000005373 External link lk SF
  lk PF
ENSLAFP00000012589 External link lk SF
  lk PF
ENSLAFP00000010140 External link lk SF
  lk PF
ENSLAFP00000002245 External link lk SF
  lk PF
ENSLAFP00000002293 External link lk SF
  lk PF
ENSLAFP00000002265 External link lk SF
  lk PF
ENSLAFP00000000483 External link lk SF
  lk PF
ENSLAFP00000008567 External link lk SF
  lk PF
ENSLAFP00000001790 External link lk SF
  lk PF
ENSLAFP00000007766 External link lk SF
  lk PF
ENSLAFP00000015516 External link lk SF
  lk PF
ENSLAFP00000004698 External link lk SF
  lk PF
ENSLAFP00000005389 External link lk SF
  lk PF
ENSLAFP00000009757 External link lk SF
  lk PF
ENSLAFP00000011656 External link lk SF
  lk PF
ENSLAFP00000011366 External link lk SF
  lk PF
ENSLAFP00000006570 External link lk SF
  lk PF
ENSLAFP00000000380 External link lk SF
  lk PF
ENSLAFP00000014927 External link lk SF
  lk PF
ENSLAFP00000012768 External link lk SF
  lk PF
ENSLAFP00000011195 External link lk SF
  lk PF
ENSLAFP00000014816 External link lk SF
  lk PF
ENSLAFP00000012586 External link lk SF
  lk PF
ENSLAFP00000004910 External link lk SF
  lk PF
ENSLAFP00000013272 External link lk SF
  lk PF
ENSLAFP00000011144 External link lk SF
  lk PF
ENSLAFP00000013626 External link lk SF
  lk PF
ENSLAFP00000007674 External link lk SF
  lk PF
ENSLAFP00000006568 External link lk SF
  lk PF
ENSLAFP00000014889 External link lk SF
  lk PF