DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Laccaria bicolor
Taxonomy: Eukaryota; Fungi; Basidiomycota; Hymenomycetes; Homobasidiomycetes; Agaricales; Tricholomataceae; Laccaria
source (downloaded: 2007-03-01)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Lacbi1|300881|eu2.Lbscf0001g03300 External link lo SF
  lo PF
jgi|Lacbi1|247901|e_gww1.7.313.1 External link lo SF
  lo PF
jgi|Lacbi1|300609|eu2.Lbscf0001g00580 External link lo SF
  lo PF
jgi|Lacbi1|227966|e_gwh1.1.1408.1 External link lo SF
  lo PF
jgi|Lacbi1|293949|estExt_fgenesh2_pg.C_90336 External link lo SF
  lo PF
jgi|Lacbi1|302892|eu2.Lbscf0022g01820 External link lo SF
  lo PF
jgi|Lacbi1|302899|eu2.Lbscf0022g01890 External link lo SF
  lo PF
jgi|Lacbi1|308018|eu2.Lbscf0038g01000 External link lo SF
  lo PF
jgi|Lacbi1|297200|eu2.Lbscf0011g03570 External link lo SF
  lo PF
jgi|Lacbi1|297145|eu2.Lbscf0011g03020 External link lo SF
  lo PF
jgi|Lacbi1|292733|estExt_fgenesh2_pg.C_40260 External link lo SF
  lo PF
jgi|Lacbi1|295375|estExt_fgenesh2_pg.C_380074 External link lo SF
  lo PF
jgi|Lacbi1|170124|gwh1.38.94.1 External link lo SF
  lo PF
jgi|Lacbi1|313622|eu2.Lbscf0005g02110 External link lo SF
  lo PF
jgi|Lacbi1|309166|eu2.Lbscf0003g08050 External link lo SF
  lo PF
jgi|Lacbi1|301029|eu2.Lbscf0001g04780 External link lo SF
  lo PF
jgi|Lacbi1|292029|estExt_fgenesh2_pg.C_20246 External link lo SF
  lo PF
jgi|Lacbi1|313811|eu2.Lbscf0005g04000 External link lo SF
  lo PF
jgi|Lacbi1|304198|eu2.Lbscf0271g00010 External link lo SF
  lo PF
jgi|Lacbi1|296682|eu2.Lbscf0010g04910 External link lo SF
  lo PF
jgi|Lacbi1|293353|estExt_fgenesh2_pg.C_60305 External link lo SF
  lo PF
jgi|Lacbi1|299937|eu2.Lbscf0018g00240 External link lo SF
  lo PF
jgi|Lacbi1|297118|eu2.Lbscf0011g02750 External link lo SF
  lo PF
jgi|Lacbi1|315220|eu2.Lbscf0069g00020 External link lo SF
  lo PF
jgi|Lacbi1|254611|e_gww1.48.60.1 External link lo SF
  lo PF
jgi|Lacbi1|303218|eu2.Lbscf0023g02020 External link lo SF
  lo PF
jgi|Lacbi1|311707|eu2.Lbscf0004g06630 External link lo SF
  lo PF
jgi|Lacbi1|308722|eu2.Lbscf0003g03610 External link lo SF
  lo PF
jgi|Lacbi1|296436|eu2.Lbscf0010g02450 External link lo SF
  lo PF
jgi|Lacbi1|313614|eu2.Lbscf0005g02030 External link lo SF
  lo PF
jgi|Lacbi1|296989|eu2.Lbscf0011g01460 External link lo SF
  lo PF
jgi|Lacbi1|167431|gwh1.41.127.1 External link lo SF
  lo PF
jgi|Lacbi1|309008|eu2.Lbscf0003g06470 External link lo SF
  lo PF
jgi|Lacbi1|311840|eu2.Lbscf0004g07960 External link lo SF
  lo PF
jgi|Lacbi1|316453|eu2.Lbscf0073g00690 External link lo SF
  lo PF
jgi|Lacbi1|296988|eu2.Lbscf0011g01450 External link lo SF
  lo PF
jgi|Lacbi1|304495|eu2.Lbscf0028g00440 External link lo SF
  lo PF
jgi|Lacbi1|313642|eu2.Lbscf0005g02310 External link lo SF
  lo PF
jgi|Lacbi1|230018|e_gwh1.2.213.1 External link lo SF
  lo PF
jgi|Lacbi1|303137|eu2.Lbscf0023g01210 External link lo SF
  lo PF
jgi|Lacbi1|305811|eu2.Lbscf0002g08690 External link lo SF
  lo PF
jgi|Lacbi1|300503|eu2.Lbscf0019g02490 External link lo SF
  lo PF
jgi|Lacbi1|301338|eu2.Lbscf0001g07870 External link lo SF
  lo PF
jgi|Lacbi1|298403|eu2.Lbscf0014g00160 External link lo SF
  lo PF
jgi|Lacbi1|293478|estExt_fgenesh2_pg.C_60495 External link lo SF
  lo PF
jgi|Lacbi1|311698|eu2.Lbscf0004g06540 External link lo SF
  lo PF
jgi|Lacbi1|313780|eu2.Lbscf0005g03690 External link lo SF
  lo PF
jgi|Lacbi1|317073|eu2.Lbscf0007g02010 External link lo SF
  lo PF
jgi|Lacbi1|300072|eu2.Lbscf0018g01590 External link lo SF
  lo PF No hits
jgi|Lacbi1|292149|estExt_fgenesh2_pg.C_20489 External link lo SF
  lo PF