DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Mus musculus 49_37b (longest transcript per gene)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus
source (downloaded: 2008-03-21)

The longest transcript per gene genomes use the longest transcript as the single representative protein for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
ENSMUSP00000021791 External link mh SF
Gene name: Gcm2  mh PF
ENSMUSP00000024104 External link mh SF
Gene name: Gcm1  mh PF
ENSMUSP00000046812 External link mh SF
Gene name: Dmrt3  mh PF
ENSMUSP00000057488 External link mh SF
Gene name: Dmrta1  mh PF
ENSMUSP00000025755 External link mh SF
Gene name: Dmrt1  mh PF
ENSMUSP00000011493 External link mh SF
Gene name: Dmrtc2  mh PF
ENSMUSP00000064220 External link mh SF
Gene name: Dmrtb1  mh PF
ENSMUSP00000060441 External link mh SF
Gene name: Dmrta2  mh PF
ENSMUSP00000059654 External link mh SF
Gene name: Dmrt2  mh PF
ENSMUSP00000031976 External link mh SF
Gene name: Prdm5  mh PF
ENSMUSP00000089513 External link mh SF
Gene name: Prdm6  mh PF
ENSMUSP00000111058 External link mh SF
Gene name: Prdm14  mh PF
ENSMUSP00000109098 External link mh SF
Gene name: Prdm12  mh PF
ENSMUSP00000041909 External link mh SF
Gene name: Neil3  mh PF
ENSMUSP00000019257 External link mh SF
Gene name: Aire  mh PF
ENSMUSP00000079095 External link mh SF
Gene name: Sp140  mh PF
ENSMUSP00000111723 External link mh SF
  mh PF
ENSMUSP00000091226 External link mh SF
Gene name: Sp110  mh PF
ENSMUSP00000037075 External link mh SF
Gene name: Gmeb2  mh PF
ENSMUSP00000111587 External link mh SF
Gene name: AC168977.1  mh PF
ENSMUSP00000030733 External link mh SF
Gene name: Gmeb1  mh PF
ENSMUSP00000079395 External link mh SF
Gene name: Deaf1  mh PF
ENSMUSP00000037619 External link mh SF
Gene name: L3mbtl3  mh PF
ENSMUSP00000044038 External link mh SF
Gene name: L3mbtl  mh PF
ENSMUSP00000085969 External link mh SF
Gene name: Phf20  mh PF
ENSMUSP00000023165 External link mh SF
Gene name: Crebbp  mh PF
ENSMUSP00000066789 External link mh SF
Gene name: Ep300  mh PF
ENSMUSP00000102374 External link mh SF
Gene name: Bptf  mh PF
ENSMUSP00000025746 External link mh SF
Gene name: Dpf2  mh PF
ENSMUSP00000103866 External link mh SF
Gene name: Dpf1  mh PF
ENSMUSP00000105946 External link mh SF
Gene name: Dpf3  mh PF
ENSMUSP00000095747 External link mh SF
Gene name: Nfx1  mh PF
ENSMUSP00000005064 External link mh SF
Gene name: Pias4  mh PF
ENSMUSP00000069259 External link mh SF
Gene name: Pias3  mh PF
ENSMUSP00000079764 External link mh SF
Gene name: Pias2  mh PF
ENSMUSP00000096248 External link mh SF
Gene name: Pias1  mh PF
ENSMUSP00000000253 External link mh SF
Gene name: Lhx2  mh PF
ENSMUSP00000027740 External link mh SF
Gene name: Lhx4  mh PF
ENSMUSP00000031591 External link mh SF
Gene name: Lhx5  mh PF
ENSMUSP00000018842 External link mh SF
Gene name: Lhx1  mh PF
ENSMUSP00000043616 External link mh SF
Gene name: Lmx1b  mh PF
ENSMUSP00000028302 External link mh SF
Gene name: Lhx3  mh PF
ENSMUSP00000029852 External link mh SF
Gene name: Lhx8  mh PF
ENSMUSP00000108587 External link mh SF
Gene name: Lhx6  mh PF
ENSMUSP00000028003 External link mh SF
Gene name: Lmx1a  mh PF
ENSMUSP00000107657 External link mh SF
Gene name: Lhx9  mh PF
ENSMUSP00000100041 External link mh SF
Gene name: Gata3  mh PF
ENSMUSP00000015771 External link mh SF
Gene name: Gata5  mh PF
ENSMUSP00000033502 External link mh SF
Gene name: Gata1  mh PF
ENSMUSP00000015197 External link mh SF
Gene name: Gata2  mh PF