DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Mus musculus 49_37b (all transcripts)
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus
source (downloaded: 2008-03-21)

The all transcripts genomes include all the transcripts for each gene.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
ENSMUSP00000024104 External link mm SF
Gene name: Gcm1  mm PF
ENSMUSP00000021791 External link mm SF
Gene name: Gcm2  mm PF
ENSMUSP00000011493 External link mm SF
Gene name: Dmrtc2  mm PF
ENSMUSP00000025755 External link mm SF
Gene name: Dmrt1  mm PF
ENSMUSP00000060441 External link mm SF
Gene name: Dmrta2  mm PF
ENSMUSP00000059654 External link mm SF
Gene name: Dmrt2  mm PF
ENSMUSP00000057488 External link mm SF
Gene name: Dmrta1  mm PF
ENSMUSP00000064220 External link mm SF
Gene name: Dmrtb1  mm PF
ENSMUSP00000046812 External link mm SF
Gene name: Dmrt3  mm PF
ENSMUSP00000084803 External link mm SF
Gene name: Dmrt1  mm PF
ENSMUSP00000031976 External link mm SF
Gene name: Prdm5  mm PF
ENSMUSP00000089513 External link mm SF
Gene name: Prdm6  mm PF
ENSMUSP00000111058 External link mm SF
Gene name: Prdm14  mm PF
ENSMUSP00000044245 External link mm SF
Gene name: Prdm14  mm PF
ENSMUSP00000111057 External link mm SF
Gene name: Prdm6  mm PF
ENSMUSP00000109098 External link mm SF
Gene name: Prdm12  mm PF
ENSMUSP00000041909 External link mm SF
Gene name: Neil3  mm PF
ENSMUSP00000019257 External link mm SF
Gene name: Aire  mm PF
ENSMUSP00000101035 External link mm SF
Gene name: Aire  mm PF
ENSMUSP00000079095 External link mm SF
Gene name: Sp140  mm PF
ENSMUSP00000101034 External link mm SF
Gene name: Aire  mm PF
ENSMUSP00000111723 External link mm SF
  mm PF
ENSMUSP00000030733 External link mm SF
Gene name: Gmeb1  mm PF
ENSMUSP00000101584 External link mm SF
Gene name: Gmeb1  mm PF
ENSMUSP00000101585 External link mm SF
Gene name: Gmeb1  mm PF
ENSMUSP00000097129 External link mm SF
Gene name: Aire  mm PF
ENSMUSP00000095564 External link mm SF
Gene name: Deaf1  mm PF
ENSMUSP00000079395 External link mm SF
Gene name: Deaf1  mm PF
ENSMUSP00000091226 External link mm SF
Gene name: Sp110  mm PF
ENSMUSP00000111587 External link mm SF
Gene name: AC168977.1  mm PF
ENSMUSP00000081481 External link mm SF
Gene name: Deaf1  mm PF
ENSMUSP00000037075 External link mm SF
Gene name: Gmeb2  mm PF
ENSMUSP00000037619 External link mm SF
Gene name: L3mbtl3  mm PF
ENSMUSP00000101158 External link mm SF
Gene name: L3mbtl3  mm PF
ENSMUSP00000044038 External link mm SF
Gene name: L3mbtl  mm PF
ENSMUSP00000043138 External link mm SF
Gene name: Phf20  mm PF
ENSMUSP00000085969 External link mm SF
Gene name: Phf20  mm PF
ENSMUSP00000066789 External link mm SF
Gene name: Ep300  mm PF
ENSMUSP00000079177 External link mm SF
Gene name: Crebbp  mm PF
ENSMUSP00000023165 External link mm SF
Gene name: Crebbp  mm PF
ENSMUSP00000102373 External link mm SF
Gene name: Bptf  mm PF
ENSMUSP00000102374 External link mm SF
Gene name: Bptf  mm PF
ENSMUSP00000025746 External link mm SF
Gene name: Dpf2  mm PF
ENSMUSP00000070539 External link mm SF
Gene name: Dpf1  mm PF
ENSMUSP00000105946 External link mm SF
Gene name: Dpf3  mm PF
ENSMUSP00000103866 External link mm SF
Gene name: Dpf1  mm PF
ENSMUSP00000054385 External link mm SF
Gene name: Dpf1  mm PF
ENSMUSP00000052303 External link mm SF
Gene name: Bptf  mm PF
ENSMUSP00000095747 External link mm SF
Gene name: Nfx1  mm PF
ENSMUSP00000069259 External link mm SF
Gene name: Pias3  mm PF