DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Anolis carolinensis Early Assembly
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Iguania; Iguanidae; Polychrotinae; Anolis
source (downloaded: 2007-07-26)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
scaffold_474.1 External link nk SF
  nk PF
scaffold_618.4 External link nk SF
  nk PF
scaffold_128.18 External link nk SF
  nk PF
scaffold_12.69 External link nk SF
  nk PF
scaffold_180.43 External link nk SF
  nk PF
scaffold_160.19 External link nk SF
  nk PF
scaffold_1626.1 External link nk SF
  nk PF
scaffold_13.16 External link nk SF
  nk PF
scaffold_110.32 External link nk SF
  nk PF
scaffold_781.3 External link nk SF
  nk PF
scaffold_695.3 External link nk SF
  nk PF
scaffold_32.16 External link nk SF
  nk PF
scaffold_550.3 External link nk SF
  nk PF
scaffold_274.4 External link nk SF
  nk PF
scaffold_72.23 External link nk SF
  nk PF
scaffold_450.2 External link nk SF
  nk PF
scaffold_73.53 External link nk SF
  nk PF
scaffold_855.4 External link nk SF
  nk PF
scaffold_281.30 External link nk SF
  nk PF
scaffold_1328.1 External link nk SF
  nk PF
scaffold_413.7 External link nk SF
  nk PF
scaffold_312.20 External link nk SF
  nk PF
scaffold_422.11 External link nk SF
  nk PF
scaffold_1039.4 External link nk SF
  nk PF
scaffold_39.9 External link nk SF
  nk PF
scaffold_236.27 External link nk SF
  nk PF
scaffold_2312.1 External link nk SF
  nk PF
scaffold_562.4 External link nk SF
  nk PF
scaffold_693.1 External link nk SF
  nk PF
scaffold_416.38 External link nk SF
  nk PF
scaffold_70.3 External link nk SF
  nk PF
scaffold_1006.6 External link nk SF
  nk PF
scaffold_908.1 External link nk SF
  nk PF
scaffold_28.7 External link nk SF
  nk PF
scaffold_117.36 External link nk SF
  nk PF
scaffold_1639.1 External link nk SF
  nk PF
scaffold_238.7 External link nk SF
  nk PF
scaffold_1784.1 External link nk SF
  nk PF
scaffold_860.1 External link nk SF
  nk PF
scaffold_294.10 External link nk SF
  nk PF
scaffold_130.21 External link nk SF
  nk PF
scaffold_42.11 External link nk SF
  nk PF
scaffold_158.36 External link nk SF
  nk PF
scaffold_58.55 External link nk SF
  nk PF
scaffold_188.42 External link nk SF
  nk PF
scaffold_26.41 External link nk SF
  nk PF
scaffold_158.41 External link nk SF
  nk PF
scaffold_283.12 External link nk SF
  nk PF
scaffold_283.13 External link nk SF
  nk PF
scaffold_111.21 External link nk SF
  nk PF