DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Nematostella vectensis 1.0
Taxonomy: Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
source (downloaded: 2007-06-29)

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a detailed description.
The PFAM identifiers inside the boxes are also linked to detailed descriptions of the family.
The long family name can be viewed by holding the mouse over a colored rectangle.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The sequence ID links provide more detailed results for each predicted transcription factor.
External links are also provided, when available.
Common gene names are provided for the model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus, Saccharomyces cerevisiae. and Salmonella typhimurium LT2.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
jgi|Nemve1|130307|e_gw.278.27.1 External link nw SF
  nw PF
jgi|Nemve1|157036|e_gw.14012.1.1 External link nw SF
  nw PF
jgi|Nemve1|91098|e_gw.26.238.1 External link nw SF
  nw PF
jgi|Nemve1|207818|fgenesh1_pg.scaffold_84000074 External link nw SF
  nw PF
jgi|Nemve1|8923|gw.4546.3.1 External link nw SF
  nw PF
jgi|Nemve1|104857|e_gw.74.213.1 External link nw SF
  nw PF
jgi|Nemve1|19443|gw.183.50.1 External link nw SF
  nw PF
jgi|Nemve1|215274|fgenesh1_pg.scaffold_223000012 External link nw SF
  nw PF
jgi|Nemve1|39952|gw.57.155.1 External link nw SF
  nw PF
jgi|Nemve1|198893|fgenesh1_pg.scaffold_12000116 External link nw SF
  nw PF
jgi|Nemve1|19862|gw.322.38.1 External link nw SF
  nw PF
jgi|Nemve1|29965|gw.141.91.1 External link nw SF
  nw PF
jgi|Nemve1|141567|e_gw.586.9.1 External link nw SF
  nw PF
jgi|Nemve1|18814|gw.173.48.1 External link nw SF
  nw PF
jgi|Nemve1|113856|e_gw.120.9.1 External link nw SF
  nw PF
jgi|Nemve1|96522|e_gw.43.248.1 External link nw SF
  nw PF
jgi|Nemve1|61034|gw.22.245.1 External link nw SF
  nw PF
jgi|Nemve1|104327|e_gw.72.27.1 External link nw SF
  nw PF
jgi|Nemve1|84066|e_gw.9.119.1 External link nw SF
  nw PF
jgi|Nemve1|119550|e_gw.162.3.1 External link nw SF
  nw PF
jgi|Nemve1|112691|e_gw.113.70.1 External link nw SF
  nw PF No hits
jgi|Nemve1|197426|fgenesh1_pg.scaffold_5000232 External link nw SF
  nw PF
jgi|Nemve1|247683|estExt_fgenesh1_pg.C_3370009 External link nw SF
  nw PF No hits
jgi|Nemve1|187589|estExt_GenewiseH_1.C_1030103 External link nw SF
  nw PF
jgi|Nemve1|20650|gw.103.36.1 External link nw SF
  nw PF
jgi|Nemve1|106064|e_gw.80.213.1 External link nw SF
  nw PF
jgi|Nemve1|245146|estExt_fgenesh1_pg.C_1470039 External link nw SF
  nw PF
jgi|Nemve1|93974|e_gw.34.167.1 External link nw SF
  nw PF
jgi|Nemve1|191566|estExt_GenewiseH_1.C_2100078 External link nw SF
  nw PF
jgi|Nemve1|134544|e_gw.341.10.1 External link nw SF
  nw PF
jgi|Nemve1|240231|estExt_fgenesh1_pg.C_260066 External link nw SF
  nw PF
jgi|Nemve1|106305|e_gw.81.98.1 External link nw SF
  nw PF
jgi|Nemve1|98128|e_gw.48.23.1 External link nw SF
  nw PF
jgi|Nemve1|246590|estExt_fgenesh1_pg.C_2280026 External link nw SF
  nw PF
jgi|Nemve1|109857|e_gw.97.29.1 External link nw SF
  nw PF
jgi|Nemve1|196609|fgenesh1_pg.scaffold_2000231 External link nw SF
  nw PF
jgi|Nemve1|203423|fgenesh1_pg.scaffold_43000006 External link nw SF
  nw PF
jgi|Nemve1|134436|e_gw.338.15.1 External link nw SF
  nw PF
jgi|Nemve1|132075|e_gw.304.53.1 External link nw SF
  nw PF
jgi|Nemve1|108851|e_gw.92.1.1 External link nw SF
  nw PF
jgi|Nemve1|209681|fgenesh1_pg.scaffold_109000059 External link nw SF
  nw PF
jgi|Nemve1|167880|estExt_gwp.C_940178 External link nw SF
  nw PF
jgi|Nemve1|89471|e_gw.21.77.1 External link nw SF
  nw PF
jgi|Nemve1|101676|e_gw.61.3.1 External link nw SF
  nw PF
jgi|Nemve1|169225|estExt_gwp.C_1220087 External link nw SF
  nw PF
jgi|Nemve1|99425|e_gw.53.38.1 External link nw SF
  nw PF
jgi|Nemve1|114090|e_gw.122.1.1 External link nw SF
  nw PF
jgi|Nemve1|93844|e_gw.34.1.1 External link nw SF
  nw PF
jgi|Nemve1|149683|e_gw.3103.2.1 External link nw SF
  nw PF
jgi|Nemve1|152310|e_gw.4859.1.1 External link nw SF
  nw PF